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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9632-RA through 18771 annotations produced 1 hits



(CG9632):

Annotation Number : CG9632
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038377
Gbrowse : chr3R:11685917-11687200 (+) // 100.0 //
Probeset : 1627557_a_at
Accessions : protein= NP_650504; /// NP_732079;, nucleotide= NM_142247; /// NM_169677;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0038377.
BDGP gene expression has embryonic in situ data for CG9632: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0038377 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 10 of 4 0.00Down
Head6 10 of 4 0.10Down
Eye3 10 of 4 0.03Down
Thoracicoabdominal ganglion3 10 of 4 0.00Down
Salivary gland19 60 of 4 0.15Down
Crop5 11 of 4 0.00Down
Midgut6 10 of 4 0.00Down
Tubule4 10 of 4 0.00Down
Hindgut3 00 of 4 0.00Down
Heart4 00 of 4 0.03Down
Fat body9 42 of 4 0.07Down
Ovary2 00 of 4 0.00Down
Testis1441 424 of 410.90Up
Male accessory glands7 10 of 4 0.10Down
Virgin spermatheca10 12 of 4 0.08Down
Mated spermatheca12 12 of 4 0.09Down
Adult carcass13 41 of 4 0.10Down
Larval CNS3 00 of 4 0.03Down
Larval Salivary gland8 21 of 4 0.07Down
Larval midgut8 12 of 4 0.06Down
Larval tubule10 23 of 4 0.10Down
Larval hindgut7 12 of 4 0.05Down
Larval fat body134 704 of 4 1.00None
Larval trachea4 30 of 4 0.03Down
Larval carcass6 10 of 4 0.05Down
S2 cells (growing)4 00 of 4 0.03Down
Whole fly132 94 of 4

Looking for CG9632-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime