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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9633-RA through 18771 annotations produced 1 hits



Drosophila Replication Protein A (RpA-70):

Annotation Number : CG9633
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010173
Gbrowse : chr3R:4087839-4090171 (-) // 100.0 //
Probeset : 1627380_at
Accessions : protein= NP_524274;, nucleotide= NM_079550;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // non-traceable author statement /// 0005634 //
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from elect
FlyMine data for FBgn0010173.
BDGP gene expression has embryonic in situ data for RpA-70: 35 pix of staining in 27 body parts.
BioGrid reports that CG9633 interacts with CG14627 CG13512 .
TRiP has 1 RNAi stocks for FBgn0010173 available for purchase.
VDRC has 3 RNAi stocks for FBgn0010173 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain243 ± 94 of 4 0.40Down
Head219 ± 74 of 4 0.40Down
Eye179 ± 84 of 4 0.32Down
Thoracicoabdominal ganglion325 ± 94 of 4 0.60Down
Salivary gland242 ± 84 of 4 0.43Down
Crop325 ± 144 of 4 0.60Down
Midgut248 ± 154 of 4 0.40Down
Tubule376 ± 274 of 4 0.70Down
Hindgut356 ± 84 of 4 0.60Down
Heart280 ± 94 of 4 0.50Down
Fat body243 ± 104 of 4 0.43Down
Ovary1060 ± 144 of 4 1.90Up
Testis265 ± 144 of 4 0.50Down
Male accessory glands152 ± 94 of 4 0.30Down
Virgin spermatheca173 ± 104 of 4 0.31Down
Mated spermatheca186 ± 94 of 4 0.33Down
Adult carcass239 ± 124 of 4 0.40Down
Larval CNS696 ± 134 of 4 1.24Up
Larval Salivary gland276 ± 214 of 4 0.49Down
Larval midgut207 ± 124 of 4 0.37Down
Larval tubule417 ± 114 of 4 0.70Down
Larval hindgut262 ± 44 of 4 0.47Down
Larval fat body212 ± 124 of 4 0.40Down
Larval trachea439 ± 354 of 4 0.78Down
Larval carcass246 ± 124 of 4 0.44Down
S2 cells (growing)790 ± 184 of 4 1.40Up
Whole fly563 ± 304 of 4

Looking for CG9633-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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