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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9635-RA through 18771 annotations produced 1 hits



Shar pei (RhoGEF2):

Annotation Number : CG9635
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0023172
Gbrowse : chr2R:12914752-12932165 (+) // 100.0 //
Probeset : 1634904_s_at
Accessions : protein= NP_477317; /// NP_995868; /// NP_995869;, nucleotide= NM_057969; /// NM_206146; /// NM_206147;
Pathway : open tracheal system // inferred from mutant phenotype /// 0050770 // regulation of axonogenesis // inferred from genet
Interpro : 0005622 // intracellular // inferred from electronic annotation /// 0005826 // actomyosin contractile ring // inferred f
FlyMine data for FBgn0023172.
BioGrid reports that CG9635 interacts with CG9559 CG8416 CG8416 .
TRiP has 2 RNAi stocks for FBgn0023172 available for purchase.
VDRC has 1 RNAi stocks for FBgn0023172 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain199 64 of 4 0.90None
Head235 84 of 4 1.10None
Eye312 214 of 4 1.46Up
Thoracicoabdominal ganglion158 44 of 4 0.70Down
Salivary gland265 104 of 4 1.24None
Crop385 134 of 4 1.80Up
Midgut351 64 of 4 1.60Up
Tubule280 54 of 4 1.30Up
Hindgut507 94 of 4 2.40Up
Heart230 104 of 4 1.08None
Fat body265 264 of 4 1.24None
Ovary428 34 of 4 2.00Up
Testis43 14 of 4 0.20Down
Male accessory glands200 64 of 4 0.90None
Virgin spermatheca374 194 of 4 1.75Up
Mated spermatheca330 184 of 4 1.54Up
Adult carcass268 184 of 4 1.30None
Larval CNS285 154 of 4 1.33Up
Larval Salivary gland285 64 of 4 1.33Up
Larval midgut385 234 of 4 1.80Up
Larval tubule366 144 of 4 1.70Up
Larval hindgut475 114 of 4 2.22Up
Larval fat body260 214 of 4 1.20None
Larval trachea243 254 of 4 1.13None
Larval carcass325 384 of 4 1.52None
S2 cells (growing)416 64 of 4 1.94Up
Whole fly214 174 of 4

Looking for CG9635-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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