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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9656-RA through 18771 annotations produced 1 hits



lethal(3)84Fa (grn):

Annotation Number : CG9656
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0001138
Gbrowse : chr3R:3973076-4007164 (-) // 99.86 //
Probeset : 1632681_at
Accessions : protein= NP_001138026; /// NP_731211;, nucleotide= NM_001144554; /// NM_169206;
Pathway : DNA-dependent // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II
Interpro : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // non-traceable author sta
FlyMine data for FBgn0001138.
Homophila reports that CG9656 is a close match (8e-40) to human gene ERYF1;GATA1;GF1;NFE1 (NP_002040), a gene associated with Dyserythropoietic anemia with thrombocytopenia, 300367 (3);Leukemia, megakaryoblastic, of Down syndrome, 190685 (3);Leukemia, megakaryoblastic, with or without Down syndrome, 190685 (3);Macrothrombocytopenia, 300367 (3).
TRiP has 4 RNAi stocks for FBgn0001138 available for purchase.
VDRC has 1 RNAi stocks for FBgn0001138 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain24 34 of 4 3.00Up
Head15 14 of 4 1.90Up
Eye16 34 of 4 2.04None
Thoracicoabdominal ganglion53 34 of 4 6.60Up
Salivary gland9 21 of 4 1.17None
Crop8 01 of 4 1.00None
Midgut1 00 of 4 0.20Down
Tubule6 00 of 4 0.80Down
Hindgut2 00 of 4 0.30Down
Heart1 00 of 4 0.16Down
Fat body20 44 of 4 2.50Up
Ovary0 00 of 4 0.10Down
Testis1 00 of 4 0.10Down
Male accessory glands7 11 of 4 0.90None
Virgin spermatheca9 22 of 4 1.19None
Mated spermatheca16 24 of 4 2.00Up
Adult carcass8 31 of 4 1.10None
Larval CNS119 214 of 414.88Up
Larval Salivary gland2 00 of 4 0.24Down
Larval midgut262 194 of 432.67Up
Larval tubule5 20 of 4 0.60None
Larval hindgut3 11 of 4 0.43None
Larval fat body3 10 of 4 0.40Down
Larval trachea49 74 of 4 6.21Up
Larval carcass17 14 of 4 2.14Up
S2 cells (growing)1 00 of 4 0.14Down
Whole fly8 12 of 4

Looking for CG9656-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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