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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9662-RA through 18771 annotations produced 1 hits



(CG9662):

Annotation Number : CG9662
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031529
Gbrowse : chr2L:3375884-3376430 (-) // 100.0 //
Probeset : 1638645_at
Accessions : protein= NP_608772;, nucleotide= NM_134928;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
FlyMine data for FBgn0031529.
BDGP gene expression has embryonic in situ data for CG9662: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0031529 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain98 ± 04 of 4 1.40Up
Head62 ± 14 of 4 0.90None
Eye55 ± 24 of 4 0.81None
Thoracicoabdominal ganglion96 ± 14 of 4 1.40Up
Salivary gland123 ± 154 of 4 1.81Up
Crop84 ± 54 of 4 1.20None
Midgut33 ± 14 of 4 0.50Down
Tubule16 ± 03 of 4 0.20Down
Hindgut59 ± 34 of 4 0.90None
Heart43 ± 44 of 4 0.64Down
Fat body51 ± 54 of 4 0.75Down
Ovary123 ± 04 of 4 1.80Up
Testis124 ± 44 of 4 1.80Up
Male accessory glands174 ± 104 of 4 2.50Up
Virgin spermatheca109 ± 74 of 4 1.59Up
Mated spermatheca130 ± 134 of 4 1.91Up
Adult carcass51 ± 34 of 4 0.70Down
Larval CNS177 ± 124 of 4 2.60Up
Larval Salivary gland244 ± 44 of 4 3.57Up
Larval midgut42 ± 53 of 4 0.63Down
Larval tubule30 ± 10 of 4 0.40Down
Larval hindgut66 ± 34 of 4 0.97None
Larval fat body98 ± 124 of 4 1.40None
Larval trachea96 ± 104 of 4 1.41Up
Larval carcass83 ± 44 of 4 1.23None
S2 cells (growing)377 ± 124 of 4 5.52Up
Whole fly68 ± 44 of 4

Looking for CG9662-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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