FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG9664-RB through 18771 annotations produced 1 hits

(CG9664):

Annotation Number : CG9664
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031515
Gbrowse : chr2L:3291244-3294690 (-) // 100.0 //
Probeset : 1634180_s_at
Accessions : protein= NP_608759; /// NP_722889; /// NP_722890;, nucleotide= NM_134915; /// NM_164532; /// NM_164533;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0005215 // transporter activity // inferred fr
FlyMine data for FBgn0031515.
Homophila reports that CG9664 is a close match (9e-13) to human gene ABCA12;ICR2B;LI2 (NP_775099), a gene associated with Ichthyosis, harlequin, 242500 (3);Ichthyosis, lamellar 2, 601277 (3).
VDRC has 2 RNAi stocks for FBgn0031515 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	25 ± 1	4 of 4	0.90	None
Head	74 ± 7	4 of 4	2.80	Up
Eye	55 ± 4	4 of 4	2.06	Up
Thoracicoabdominal ganglion	36 ± 1	4 of 4	1.40	Up
Salivary gland	19 ± 2	2 of 4	0.74	None
Crop	78 ± 6	4 of 4	2.90	Up
Midgut	87 ± 2	4 of 4	3.30	Up
Tubule	76 ± 11	4 of 4	2.90	Up
Hindgut	25 ± 1	4 of 4	1.00	None
Heart	71 ± 5	4 of 4	2.68	Up
Fat body	113 ± 2	4 of 4	4.22	Up
Ovary	2 ± 0	0 of 4	0.10	Down
Testis	71 ± 5	4 of 4	2.70	Up
Male accessory glands	9 ± 0	1 of 4	0.40	Down
Virgin spermatheca	115 ± 3	4 of 4	4.31	Up
Mated spermatheca	73 ± 8	4 of 4	2.74	Up
Adult carcass	128 ± 5	4 of 4	4.80	Up
Larval CNS	13 ± 2	4 of 4	0.52	Down
Larval Salivary gland	8 ± 0	3 of 4	0.33	Down
Larval midgut	303 ± 88	4 of 4	11.35	None
Larval tubule	463 ± 71	4 of 4	17.30	Up
Larval hindgut	12 ± 2	3 of 4	0.46	Down
Larval fat body	900 ± 83	4 of 4	33.60	Up
Larval trachea	27 ± 6	4 of 4	1.01	None
Larval carcass	68 ± 23	4 of 4	2.55	None
S2 cells (growing)	2 ± 1	1 of 4	0.11	Down
Whole fly	26 ± 3	4 of 4

Looking for CG9664-RB. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720