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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9669-RA through 18771 annotations produced 1 hits



(CG9669):

Annotation Number : CG9669
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036667
Gbrowse : chr3L:16837666-16837961 (-) // 100.0 //
Probeset : 1623214_at
Accessions : protein= NP_648925;, nucleotide= NM_140668;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0036667.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain236 54 of 4 0.60Down
Head320 74 of 4 0.80None
Eye396 54 of 4 1.04None
Thoracicoabdominal ganglion333 134 of 4 0.90None
Salivary gland1986 584 of 4 5.19Up
Crop311 144 of 4 0.80Down
Midgut514 184 of 4 1.30Up
Tubule375 134 of 4 1.00None
Hindgut256 54 of 4 0.70Down
Heart433 154 of 4 1.13None
Fat body386 334 of 4 1.01None
Ovary482 124 of 4 1.30Up
Testis137 34 of 4 0.40Down
Male accessory glands1840 674 of 4 4.80Up
Virgin spermatheca1309 614 of 4 3.42Up
Mated spermatheca1359 1034 of 4 3.55Up
Adult carcass346 214 of 4 0.90None
Larval CNS674 224 of 4 1.76Up
Larval Salivary gland2145 244 of 4 5.61Up
Larval midgut567 384 of 4 1.48Up
Larval tubule647 114 of 4 1.70Up
Larval hindgut382 264 of 4 1.00None
Larval fat body572 584 of 4 1.50Up
Larval trachea831 1464 of 4 2.17Up
Larval carcass552 264 of 4 1.45Up
S2 cells (growing)912 214 of 4 2.39Up
Whole fly382 224 of 4

Looking for CG9669-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime