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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9670-RA through 18771 annotations produced 1 hits



falten (fal):

Annotation Number : CG9670
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028380
Gbrowse : chr3L:19287868-19291935 (+) // 100.0 //
Probeset : 1629382_at
Accessions : protein= NP_001137974; /// NP_536789;, nucleotide= NM_001144502; /// NM_080528;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0003924 // GTPase activity // non-traceable aut
FlyMine data for FBgn0028380.
BDGP gene expression has embryonic in situ data for fal: 16 pix of staining in 3 body parts.
TRiP has 3 RNAi stocks for FBgn0028380 available for purchase.
VDRC has 3 RNAi stocks for FBgn0028380 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain55 14 of 4 0.40Down
Head56 24 of 4 0.40Down
Eye63 44 of 4 0.47Down
Thoracicoabdominal ganglion52 24 of 4 0.40Down
Salivary gland48 54 of 4 0.36Down
Crop78 24 of 4 0.60Down
Midgut81 84 of 4 0.60Down
Tubule147 44 of 4 1.10Up
Hindgut51 14 of 4 0.40Down
Heart72 74 of 4 0.54Down
Fat body81 44 of 4 0.61Down
Ovary348 144 of 4 2.60Up
Testis66 44 of 4 0.50Down
Male accessory glands23 24 of 4 0.20Down
Virgin spermatheca97 44 of 4 0.72Down
Mated spermatheca112 124 of 4 0.83None
Adult carcass58 24 of 4 0.40Down
Larval CNS113 64 of 4 0.84Down
Larval Salivary gland73 34 of 4 0.55Down
Larval midgut76 14 of 4 0.56Down
Larval tubule84 84 of 4 0.60Down
Larval hindgut91 64 of 4 0.68Down
Larval fat body95 134 of 4 0.70None
Larval trachea79 54 of 4 0.59Down
Larval carcass119 54 of 4 0.89None
S2 cells (growing)300 84 of 4 2.23Up
Whole fly134 54 of 4

Looking for CG9670-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime