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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG9675-RA through 18771 annotations produced 1 hits


CG9675 (spheroide):

Annotation Number : CG9675
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030774
Gbrowse : chrX:16594478-16595989 (-) // 100.0 //
Probeset : 1624578_at
Accessions : protein= NP_573148;, nucleotide= NM_132920;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0030774.
BDGP gene expression has embryonic in situ data for CG9675: 8 pix of staining in 2 body parts.
Homophila reports that CG9675 is a close match (6e-12) to human gene ADN;CFD (NP_001919), a gene associated with Complement factor D deficiency (3).
TRiP has 1 RNAi stocks for FBgn0030774 available for purchase.
VDRC has 2 RNAi stocks for FBgn0030774 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head2 ± 10 of 4 0.00Down
Eye1 ± 00 of 4 0.01Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.00Down
Salivary gland3 ± 20 of 4 0.02Down
Crop5 ± 10 of 4 0.00Down
Midgut1756 ± 554 of 411.00Up
Tubule8 ± 60 of 4 0.10Down
Hindgut258 ± 34 of 4 1.60Up
Heart1 ± 00 of 4 0.01Down
Fat body2 ± 10 of 4 0.02Down
Ovary1 ± 00 of 4 0.00Down
Testis0 ± 00 of 4 0.00Down
Male accessory glands3 ± 10 of 4 0.00Down
Virgin spermatheca5 ± 22 of 4 0.04Down
Mated spermatheca2 ± 10 of 4 0.02Down
Adult carcass4 ± 10 of 4 0.00Down
Larval CNS1 ± 10 of 4 0.01Down
Larval Salivary gland2 ± 00 of 4 0.02Down
Larval midgut1468 ± 2034 of 4 9.21Up
Larval tubule3 ± 10 of 4 0.00Down
Larval hindgut29 ± 84 of 4 0.18Down
Larval fat body1 ± 00 of 4 0.00Down
Larval trachea1 ± 10 of 4 0.01Down
Larval carcass0 ± 00 of 4 0.01Down
S2 cells (growing)0 ± 00 of 4 0.00Down
Whole fly159 ± 204 of 4

Looking for CG9675-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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