FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG9677-RA through 18771 annotations produced 1 hits

Int6 homologue (Int6):

Annotation Number : CG9677
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0025582
Gbrowse : chr3L:16778334-16780089 (-) // 100.0 //
Probeset : 1640174_at
Accessions : protein= NP_477385;, nucleotide= NM_058037;
Pathway : engulfment // inferred from mutant phenotype"
Interpro : 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // non-traceable author statement ///
FlyMine data for FBgn0025582.
BDGP gene expression has embryonic in situ data for Int6: 13 pix of staining in 19 body parts.
VDRC has 2 RNAi stocks for FBgn0025582 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	554 ± 21	4 of 4	0.60	Down
Head	825 ± 41	4 of 4	0.90	None
Eye	1333 ± 15	4 of 4	1.52	Up
Thoracicoabdominal ganglion	732 ± 43	4 of 4	0.80	None
Salivary gland	1452 ± 35	4 of 4	1.66	Up
Crop	950 ± 27	4 of 4	1.10	None
Midgut	926 ± 29	4 of 4	1.10	None
Tubule	948 ± 11	4 of 4	1.10	Up
Hindgut	920 ± 22	4 of 4	1.10	None
Heart	1207 ± 61	4 of 4	1.38	Up
Fat body	1293 ± 86	4 of 4	1.48	Up
Ovary	1012 ± 16	4 of 4	1.20	None
Testis	399 ± 9	4 of 4	0.50	Down
Male accessory glands	2203 ± 97	4 of 4	2.50	Up
Virgin spermatheca	1485 ± 84	4 of 4	1.70	Up
Mated spermatheca	1588 ± 41	4 of 4	1.81	Up
Adult carcass	806 ± 28	4 of 4	0.90	None
Larval CNS	1093 ± 85	4 of 4	1.25	Up
Larval Salivary gland	1948 ± 62	4 of 4	2.22	Up
Larval midgut	718 ± 16	4 of 4	0.82	Down
Larval tubule	907 ± 19	4 of 4	1.00	None
Larval hindgut	1002 ± 31	4 of 4	1.14	None
Larval fat body	859 ± 94	4 of 4	1.00	None
Larval trachea	1687 ± 64	4 of 4	1.93	Up
Larval carcass	1269 ± 25	4 of 4	1.45	Up
S2 cells (growing)	1916 ± 31	4 of 4	2.19	Up
Whole fly	875 ± 48	4 of 4

Looking for CG9677-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720