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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9691-RA through 18771 annotations produced 1 hits



(CG9691):

Annotation Number : CG9691
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030160
Gbrowse : chrX:9778474-9779079 (+) // 100.0 //
Probeset : 1628187_s_at
Accessions : protein= NP_572588; /// NP_727371;, nucleotide= NM_132360; /// NM_167206;
FlyMine data for FBgn0030160.
BDGP gene expression has embryonic in situ data for CG9691: 13 pix of staining in 7 body parts.
VDRC has 3 RNAi stocks for FBgn0030160 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain220 ± 154 of 4 0.30Down
Head2685 ± 824 of 4 3.90Up
Eye2754 ± 1354 of 4 3.96Up
Thoracicoabdominal ganglion320 ± 64 of 4 0.50Down
Salivary gland1224 ± 894 of 4 1.76Up
Crop1971 ± 724 of 4 2.80Up
Midgut13 ± 24 of 4 0.00Down
Tubule27 ± 33 of 4 0.00Down
Hindgut1679 ± 414 of 4 2.40Up
Heart3284 ± 2734 of 4 4.73Up
Fat body3397 ± 1514 of 4 4.89Up
Ovary5 ± 10 of 4 0.00Down
Testis194 ± 124 of 4 0.30Down
Male accessory glands26 ± 14 of 4 0.00Down
Virgin spermatheca473 ± 294 of 4 0.68Down
Mated spermatheca359 ± 284 of 4 0.52Down
Adult carcass2727 ± 924 of 4 3.90Up
Larval CNS322 ± 544 of 4 0.46Down
Larval Salivary gland78 ± 74 of 4 0.11Down
Larval midgut20 ± 34 of 4 0.03Down
Larval tubule15 ± 13 of 4 0.00Down
Larval hindgut1184 ± 1244 of 4 1.71Up
Larval fat body3423 ± 4924 of 4 4.90Up
Larval trachea1642 ± 3104 of 4 2.36Up
Larval carcass819 ± 564 of 4 1.18None
S2 cells (growing)32 ± 34 of 4 0.05Down
Whole fly694 ± 104 of 4

Looking for CG9691-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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