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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9695-RA through 18771 annotations produced 1 hits



disabled (Dab):

Annotation Number : CG9695
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000414
Gbrowse : chr3L:16706241-16717089 (+) // 100.0 //
Probeset : 1629243_at
Accessions : protein= NP_001163455; /// NP_524119;, nucleotide= NM_001169984; /// NM_079395;
Pathway : 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // non-traceable author statement /// 000573
Interpro : 0005118 // sevenless binding // inferred from physical interaction /// 0005515 // protein binding // inferred from physi
FlyMine data for FBgn0000414.
BioGrid reports that CG9695 interacts with CG4032 CG4032 CG4032 CG4032 CG4032 CG4032 CG4032 CG18085 CG18085 CG6033 CG18085 .
VDRC has 3 RNAi stocks for FBgn0000414 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain305 74 of 4 6.60Up
Head82 74 of 4 1.80Up
Eye121 124 of 4 2.64Up
Thoracicoabdominal ganglion215 214 of 4 4.70Up
Salivary gland116 94 of 4 2.54Up
Crop248 84 of 4 5.40Up
Midgut16 21 of 4 0.40Down
Tubule64 84 of 4 1.40Up
Hindgut133 44 of 4 2.90Up
Heart70 44 of 4 1.53Up
Fat body33 54 of 4 0.72Down
Ovary97 44 of 4 2.10Up
Testis10 14 of 4 0.20Down
Male accessory glands46 54 of 4 1.00None
Virgin spermatheca9 10 of 4 0.21Down
Mated spermatheca6 10 of 4 0.14Down
Adult carcass38 24 of 4 0.80None
Larval CNS176 144 of 4 3.84Up
Larval Salivary gland19 04 of 4 0.43Down
Larval midgut9 10 of 4 0.21Down
Larval tubule35 24 of 4 0.80Down
Larval hindgut79 64 of 4 1.72Up
Larval fat body13 31 of 4 0.30Down
Larval trachea66 104 of 4 1.45Up
Larval carcass66 44 of 4 1.46Up
S2 cells (growing)37 14 of 4 0.82None
Whole fly46 24 of 4

Looking for CG9695-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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