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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9698-RA through 18771 annotations produced 1 hits



March 2006 (FlyBase/BDGP 5.3) (chr3R:26340638-26342641 (+) // 100.0 //):

Annotation Number : CG9698
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse :
Probeset : 1639863_at
Accessions : protein= EC:1.13.11.- /// EC:1.14.11.2, nucleotide=
Interpro : 0018401 // peptidyl-proline hydroxylation to 4-hydroxy-L-proline // inferred from sequence or structural similarity ///


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 11 of 4 0.80None
Head6 21 of 4 1.10None
Eye3 00 of 4 0.60None
Thoracicoabdominal ganglion6 00 of 4 1.10None
Salivary gland15 51 of 4 2.64None
Crop7 10 of 4 1.20None
Midgut6 10 of 4 1.10None
Tubule4 00 of 4 0.80None
Hindgut7 10 of 4 1.20None
Heart3 10 of 4 0.63None
Fat body7 30 of 4 1.22None
Ovary3 00 of 4 0.60None
Testis3 00 of 4 0.60None
Male accessory glands184 94 of 431.70Up
Virgin spermatheca6 10 of 4 1.05None
Mated spermatheca6 10 of 4 1.14None
Adult carcass9 30 of 4 1.70None
Larval CNS2 10 of 4 0.42None
Larval Salivary gland5 30 of 4 0.92None
Larval midgut5 10 of 4 0.90None
Larval tubule4 10 of 4 0.70None
Larval hindgut2 00 of 4 0.46None
Larval fat body7 21 of 4 1.30None
Larval trachea6 20 of 4 1.04None
Larval carcass4 10 of 4 0.70None
S2 cells (growing)4 10 of 4 0.79None
Whole fly5 11 of 4

Looking for CG9698-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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