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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG9701-RA through 18771 annotations produced 1 hits


Annotation Number : CG9701
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036659
Gbrowse : chr3L:16726673-16732471 (+) // 100.0 //
Probeset : 1633834_at
Accessions : protein= NP_648918;, nucleotide= NM_140661;
Interpro : "0003824 // catalytic activity // inferred from electronic annotation /// 0004553 // hydrolase activity
FlyMine data for FBgn0036659.
BDGP gene expression has embryonic in situ data for CG9701: 13 pix of staining in 3 body parts.
Homophila reports that CG9701 is a close match (2e-74) to human gene KL;KLOTHO (NP_004786), a gene associated with Tumoral calcinosis, hyperphosphatemic, 211900 (3);{Coronary artery disease, susceptibility to} (3).
VDRC has 3 RNAi stocks for FBgn0036659 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 02 of 4 0.10Down
Head153 194 of 4 2.20Up
Eye83 74 of 4 1.22None
Thoracicoabdominal ganglion6 11 of 4 0.10Down
Salivary gland19 23 of 4 0.28Down
Crop33 04 of 4 0.50Down
Midgut108 14 of 4 1.60Up
Tubule9 12 of 4 0.10Down
Hindgut20 24 of 4 0.30Down
Heart13 24 of 4 0.19Down
Fat body20 104 of 4 0.30Down
Ovary6 12 of 4 0.10Down
Testis14 14 of 4 0.20Down
Male accessory glands10 11 of 4 0.20Down
Virgin spermatheca157 114 of 4 2.29Up
Mated spermatheca318 464 of 4 4.63Up
Adult carcass362 84 of 4 5.30Up
Larval CNS5 21 of 4 0.08Down
Larval Salivary gland16 14 of 4 0.24Down
Larval midgut25 14 of 4 0.37Down
Larval tubule35 54 of 4 0.50Down
Larval hindgut38 54 of 4 0.56Down
Larval fat body10 21 of 4 0.20Down
Larval trachea150 274 of 4 2.19Up
Larval carcass1448 1914 of 421.05Up
S2 cells (growing)7 13 of 4 0.11Down
Whole fly68 44 of 4

Looking for CG9701-RA. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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