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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9703-RA through 18771 annotations produced 1 hits



Aberrant X segregation (Axs):

Annotation Number : CG9703
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000152
Gbrowse : chrX:16574121-16577928 (-) // 100.0 //
Probeset : 1640260_at
Accessions : protein= NP_001033849; /// NP_476777;, nucleotide= NM_001038760; /// NM_057429;
Pathway : 0005640 // nuclear outer membrane // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from di
FlyMine data for FBgn0000152.
Homophila reports that CG9703 is a close match (3e-28) to human gene GDD1;TMEM16E (NP_998764), a gene associated with Gnthodiaphyseal dysplasia, 166260 (3).
BioGrid reports that CG9703 interacts with CG3018 .
VDRC has 2 RNAi stocks for FBgn0000152 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain34 ± 24 of 4 0.90None
Head37 ± 14 of 4 1.00None
Eye13 ± 04 of 4 0.33Down
Thoracicoabdominal ganglion52 ± 24 of 4 1.40Up
Salivary gland11 ± 30 of 4 0.28Down
Crop71 ± 24 of 4 1.80Up
Midgut26 ± 04 of 4 0.70Down
Tubule82 ± 24 of 4 2.10Up
Hindgut79 ± 44 of 4 2.00Up
Heart62 ± 44 of 4 1.60Up
Fat body11 ± 14 of 4 0.30Down
Ovary61 ± 24 of 4 1.60Up
Testis9 ± 01 of 4 0.20Down
Male accessory glands115 ± 64 of 4 2.90Up
Virgin spermatheca11 ± 14 of 4 0.29Down
Mated spermatheca12 ± 14 of 4 0.33Down
Adult carcass51 ± 44 of 4 1.30None
Larval CNS46 ± 54 of 4 1.20None
Larval Salivary gland176 ± 84 of 4 4.53Up
Larval midgut24 ± 04 of 4 0.62Down
Larval tubule103 ± 74 of 4 2.70Up
Larval hindgut138 ± 54 of 4 3.54Up
Larval fat body56 ± 84 of 4 1.40None
Larval trachea123 ± 64 of 4 3.16Up
Larval carcass163 ± 124 of 4 4.18Up
S2 cells (growing)93 ± 04 of 4 2.38Up
Whole fly39 ± 24 of 4

Looking for CG9703-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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