FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG9704-RB through 18771 annotations produced 1 hits

disabled (Nrt):

Annotation Number : CG9704
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004108
Gbrowse : chr3L:16759173-16770678 (+) // 100.0 //
Probeset : 1623966_s_at
Accessions : protein= NP_476798; /// NP_730196;, nucleotide= NM_057450; /// NM_168682;
Pathway : 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from sequence or str
FlyMine data for FBgn0004108.
BDGP gene expression has embryonic in situ data for Nrt: 15 pix of staining in 19 body parts.
Homophila reports that CG9704 is a close match (9e-12) to human gene AITD3;TG (NP_003226), a gene associated with Goiter, adolescent multinodular (1);Goiter, nonendemic, simple (3);Hypothyroidism, hereditary congenital (3);{Autoimmune thyroid disease, susceptibility to 3}, 608175 (3).
BioGrid reports that CG9704 interacts with CG1634 CG3936 CG3936 CG16973 .
TRiP has 1 RNAi stocks for FBgn0004108 available for purchase.
VDRC has 2 RNAi stocks for FBgn0004108 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	130 ± 12	4 of 4	5.40	Up
Head	50 ± 4	4 of 4	2.10	Up
Eye	37 ± 2	4 of 4	1.55	Up
Thoracicoabdominal ganglion	86 ± 4	4 of 4	3.60	Up
Salivary gland	5 ± 1	1 of 4	0.21	Down
Crop	7 ± 0	2 of 4	0.30	Down
Midgut	10 ± 1	4 of 4	0.40	Down
Tubule	5 ± 0	1 of 4	0.20	Down
Hindgut	9 ± 1	4 of 4	0.40	Down
Heart	12 ± 2	4 of 4	0.53	None
Fat body	20 ± 4	4 of 4	0.85	None
Ovary	25 ± 1	4 of 4	1.10	None
Testis	8 ± 1	3 of 4	0.30	Down
Male accessory glands	25 ± 3	4 of 4	1.10	None
Virgin spermatheca	5 ± 1	2 of 4	0.21	Down
Mated spermatheca	5 ± 0	2 of 4	0.24	Down
Adult carcass	11 ± 2	2 of 4	0.50	Down
Larval CNS	735 ± 187	4 of 4	30.27	Up
Larval Salivary gland	3 ± 1	0 of 4	0.15	Down
Larval midgut	4 ± 0	0 of 4	0.19	Down
Larval tubule	2 ± 0	1 of 4	0.10	Down
Larval hindgut	3 ± 0	2 of 4	0.14	Down
Larval fat body	12 ± 0	4 of 4	0.50	None
Larval trachea	7 ± 2	4 of 4	0.30	Down
Larval carcass	6 ± 0	4 of 4	0.27	Down
S2 cells (growing)	4 ± 0	2 of 4	0.18	Down
Whole fly	24 ± 4	4 of 4

Looking for CG9704-RB. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720