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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG9712-RA through 18771 annotations produced 1 hits

erupted (TSG101):

Annotation Number : CG9712
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036666
Gbrowse : chr3L:16835398-16837686 (+) // 100.0 //
Probeset : 1640247_at
Accessions : protein= NP_524120;, nucleotide= NM_079396;
Interpro : 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical inter
FlyMine data for FBgn0036666.
BDGP gene expression has embryonic in situ data for TSG101: 11 pix of staining in 8 body parts.
Homophila reports that CG9712 is a close match (1e-92) to human gene TSG101 (NP_006283), a gene associated with Breast cancer (3).
TRiP has 2 RNAi stocks for FBgn0036666 available for purchase.
VDRC has 1 RNAi stocks for FBgn0036666 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain480 44 of 4 1.50Up
Head340 114 of 4 1.10None
Eye634 144 of 4 1.96Up
Thoracicoabdominal ganglion559 214 of 4 1.70Up
Salivary gland273 184 of 4 0.84None
Crop372 224 of 4 1.20None
Midgut309 24 of 4 1.00None
Tubule769 264 of 4 2.40Up
Hindgut324 34 of 4 1.00None
Heart550 324 of 4 1.70Up
Fat body234 174 of 4 0.72Down
Ovary274 134 of 4 0.80None
Testis1428 84 of 4 4.40Up
Male accessory glands186 124 of 4 0.60Down
Virgin spermatheca220 94 of 4 0.68Down
Mated spermatheca199 64 of 4 0.61Down
Adult carcass321 104 of 4 1.00None
Larval CNS503 234 of 4 1.55Up
Larval Salivary gland339 194 of 4 1.05None
Larval midgut341 234 of 4 1.05None
Larval tubule935 374 of 4 2.90Up
Larval hindgut435 314 of 4 1.34Up
Larval fat body545 314 of 4 1.70Up
Larval trachea471 214 of 4 1.45Up
Larval carcass278 284 of 4 0.86None
S2 cells (growing)872 204 of 4 2.70Up
Whole fly323 174 of 4

Looking for CG9712-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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