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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9715-RA through 18771 annotations produced 1 hits



(CG9715):

Annotation Number : CG9715
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036668
Gbrowse : chr3L:16838531-16845450 (+) // 99.83 //
Probeset : 1627694_at
Accessions : protein= NP_648926;, nucleotide= NM_140669;
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from p
FlyMine data for FBgn0036668.
VDRC has 1 RNAi stocks for FBgn0036668 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain235 44 of 4 1.20Up
Head129 74 of 4 0.60Down
Eye118 34 of 4 0.58Down
Thoracicoabdominal ganglion195 64 of 4 1.00None
Salivary gland194 104 of 4 0.96None
Crop203 54 of 4 1.00None
Midgut149 44 of 4 0.70Down
Tubule135 34 of 4 0.70Down
Hindgut159 74 of 4 0.80Down
Heart136 24 of 4 0.68Down
Fat body175 204 of 4 0.86None
Ovary519 164 of 4 2.60Up
Testis157 54 of 4 0.80Down
Male accessory glands289 144 of 4 1.40Up
Virgin spermatheca412 174 of 4 2.04Up
Mated spermatheca323 94 of 4 1.60Up
Adult carcass134 14 of 4 0.70Down
Larval CNS376 204 of 4 1.86Up
Larval Salivary gland232 74 of 4 1.15None
Larval midgut150 184 of 4 0.74None
Larval tubule241 74 of 4 1.20Up
Larval hindgut201 74 of 4 0.99None
Larval fat body211 144 of 4 1.00None
Larval trachea231 104 of 4 1.14None
Larval carcass237 84 of 4 1.17None
S2 cells (growing)281 114 of 4 1.39Up
Whole fly202 124 of 4

Looking for CG9715-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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