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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9716-RA through 18771 annotations produced 1 hits



Cyp313b1 (Cyp313b1):

Annotation Number : CG9716
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037601
Gbrowse : chr3R:4468781-4471179 (-) // 100.0 //
Probeset : 1637858_at
Accessions : protein= NP_649807;, nucleotide= NM_141550;
Pathway : 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane //
Interpro : 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred fro
FlyMine data for FBgn0037601.
BDGP gene expression has embryonic in situ data for Cyp313b1: 26 pix of staining in 2 body parts.
Homophila reports that CG9716 is a close match (8e-11) to human gene CPD6;CYP2D6;P450DB1 (NP_000097), a gene associated with Codeine sensitivity (3);Debrisoquine sensitivity (3);{?Parkinsonism, susceptibility to} (1).
VDRC has 3 RNAi stocks for FBgn0037601 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.40Down
Head9 ± 14 of 4 0.90None
Eye6 ± 14 of 4 0.67None
Thoracicoabdominal ganglion5 ± 10 of 4 0.50Down
Salivary gland23 ± 23 of 4 2.32Up
Crop12 ± 14 of 4 1.20None
Midgut15 ± 14 of 4 1.50Up
Tubule19 ± 14 of 4 1.90Up
Hindgut36 ± 44 of 4 3.50Up
Heart18 ± 04 of 4 1.82Up
Fat body40 ± 64 of 4 3.95Up
Ovary4 ± 02 of 4 0.40Down
Testis9 ± 13 of 4 0.90None
Male accessory glands12 ± 22 of 4 1.20None
Virgin spermatheca25 ± 14 of 4 2.51Up
Mated spermatheca22 ± 14 of 4 2.22Up
Adult carcass28 ± 14 of 4 2.80Up
Larval CNS5 ± 04 of 4 0.56Down
Larval Salivary gland9 ± 11 of 4 0.91None
Larval midgut15 ± 14 of 4 1.48Up
Larval tubule6 ± 12 of 4 0.60None
Larval hindgut20 ± 04 of 4 1.99Up
Larval fat body10 ± 31 of 4 1.00None
Larval trachea191 ± 174 of 418.78Up
Larval carcass154 ± 24 of 415.15Up
S2 cells (growing)4 ± 01 of 4 0.47Down
Whole fly10 ± 14 of 4

Looking for CG9716-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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