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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9722-RA through 18771 annotations produced 1 hits



(CG9722):

Annotation Number : CG9722
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038209
Gbrowse : chr3R:9978686-9979551 (-) // 100.0 //
Probeset : 1640450_at
Accessions : protein= NP_650341;, nucleotide= NM_142084;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0005102 // receptor binding // inferred from sequence or structural similarity /// 0005515 // protein binding // inferre
FlyMine data for FBgn0038209.
TRiP has 1 RNAi stocks for FBgn0038209 available for purchase.
VDRC has 1 RNAi stocks for FBgn0038209 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.10Down
Head3 ± 10 of 4 0.10Down
Eye0 ± 00 of 4 0.03Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.10Down
Salivary gland7 ± 10 of 4 0.19Down
Crop4 ± 10 of 4 0.10Down
Midgut4 ± 10 of 4 0.10Down
Tubule5 ± 00 of 4 0.10Down
Hindgut6 ± 10 of 4 0.20Down
Heart0 ± 00 of 4 0.02Down
Fat body6 ± 40 of 4 0.17Down
Ovary1 ± 00 of 4 0.00Down
Testis494 ± 134 of 413.50Up
Male accessory glands8 ± 30 of 4 0.20Down
Virgin spermatheca6 ± 10 of 4 0.17Down
Mated spermatheca7 ± 20 of 4 0.19Down
Adult carcass5 ± 20 of 4 0.20Down
Larval CNS3 ± 20 of 4 0.09Down
Larval Salivary gland3 ± 10 of 4 0.08Down
Larval midgut7 ± 20 of 4 0.19Down
Larval tubule3 ± 00 of 4 0.10Down
Larval hindgut2 ± 10 of 4 0.07Down
Larval fat body46 ± 292 of 4 1.30None
Larval trachea2 ± 30 of 4 0.07Down
Larval carcass4 ± 00 of 4 0.12Down
S2 cells (growing)0 ± 00 of 4 0.02Down
Whole fly36 ± 04 of 4

Looking for CG9722-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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