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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9743-RA through 18771 annotations produced 1 hits



(CG9743):

Annotation Number : CG9743
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039756
Gbrowse : chr3R:26022086-26028718 (-) // 100.0 //
Probeset : 1629395_at
Accessions : protein= NP_651781;, nucleotide= NM_143524;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation
Interpro : "0004768 // stearoyl-CoA 9-desaturase activity // non-traceable author statement /// 0004768 // stearoyl-CoA 9-desaturas
FlyMine data for FBgn0039756.
BDGP gene expression has embryonic in situ data for CG9743: 41 pix of staining in 21 body parts.
TRiP has 1 RNAi stocks for FBgn0039756 available for purchase.
VDRC has 1 RNAi stocks for FBgn0039756 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain149 ± 54 of 4 0.80None
Head152 ± 74 of 4 0.80None
Eye259 ± 284 of 4 1.32None
Thoracicoabdominal ganglion319 ± 94 of 4 1.60Up
Salivary gland282 ± 124 of 4 1.44Up
Crop723 ± 414 of 4 3.70Up
Midgut1883 ± 474 of 4 9.60Up
Tubule627 ± 274 of 4 3.20Up
Hindgut653 ± 204 of 4 3.30Up
Heart368 ± 214 of 4 1.87Up
Fat body17 ± 62 of 4 0.09Down
Ovary15 ± 14 of 4 0.10Down
Testis57 ± 34 of 4 0.30Down
Male accessory glands122 ± 54 of 4 0.60None
Virgin spermatheca265 ± 194 of 4 1.35None
Mated spermatheca326 ± 544 of 4 1.66None
Adult carcass138 ± 44 of 4 0.70None
Larval CNS151 ± 524 of 4 0.77None
Larval Salivary gland10 ± 02 of 4 0.05Down
Larval midgut1669 ± 3094 of 4 8.49Up
Larval tubule55 ± 54 of 4 0.30Down
Larval hindgut500 ± 654 of 4 2.54Up
Larval fat body20 ± 73 of 4 0.10Down
Larval trachea18 ± 123 of 4 0.09Down
Larval carcass53 ± 44 of 4 0.27Down
S2 cells (growing)232 ± 54 of 4 1.18None
Whole fly196 ± 244 of 4

Looking for CG9743-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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