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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9755-RA through 18771 annotations produced 1 hits



chr3R:4895478-5063404 (-) // 99.94 // (ovarette):

Annotation Number : CG9755
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1632418_s_at
Accessions : protein= , nucleotide= NP_524285; /// NP_731314; /// NP_731315; /// NP_731316; /// NP_788604;
Pathway : "0000288 // nuclear-transcribed mRNA catabolic process
Interpro : deadenylation-dependent decay // traceable author statement /// 0001709 // cell fate determination // traceable author
FlyMine data for full length.
BioGrid reports that CG9755 interacts with CG5637 CG5637 CG5637 CG3978 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain158 74 of 4 0.70Down
Head44 74 of 4 0.20Down
Eye45 84 of 4 0.20Down
Thoracicoabdominal ganglion71 114 of 4 0.30Down
Salivary gland23 73 of 4 0.10Down
Crop33 34 of 4 0.10Down
Midgut24 24 of 4 0.10Down
Tubule20 14 of 4 0.10Down
Hindgut27 24 of 4 0.10Down
Heart44 54 of 4 0.19Down
Fat body18 44 of 4 0.08Down
Ovary789 74 of 4 3.40Up
Testis21 24 of 4 0.10Down
Male accessory glands26 24 of 4 0.10Down
Virgin spermatheca16 24 of 4 0.07Down
Mated spermatheca16 14 of 4 0.07Down
Adult carcass25 53 of 4 0.10Down
Larval CNS139 104 of 4 0.61Down
Larval Salivary gland34 24 of 4 0.15Down
Larval midgut25 14 of 4 0.11Down
Larval tubule32 34 of 4 0.10Down
Larval hindgut48 24 of 4 0.21Down
Larval fat body22 44 of 4 0.10Down
Larval trachea77 84 of 4 0.33Down
Larval carcass89 134 of 4 0.39Down
S2 cells (growing)272 154 of 4 1.18None
Whole fly230 124 of 4

Looking for CG9755-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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