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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9765-RA through 18771 annotations produced 1 hits



transforming acidic coiled-coil protein (tacc):

Annotation Number : CG9765
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0026620
Gbrowse : chr3R:560135-574777 (-) // 100.0 //
Probeset : 1625034_s_at
Accessions : protein= NP_477433; /// NP_477434; /// NP_730867; /// NP_788578; /// NP_788579; /// NP_788580; /// NP_788581;, nucleotide= NM_058085; /// NM_058086; /// NM_169016; /// NM_176401; /// NM_176402; /// NM_176403; /// NM_176404;
Pathway : 0000235 // astral microtubule // traceable author statement /// 0000242 // pericentriolar material // non-traceable auth
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0008017 // microtubule binding // traceable author
FlyMine data for FBgn0026620.
BioGrid reports that CG9765 interacts with CG5000 CG5000 .
VDRC has 2 RNAi stocks for FBgn0026620 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain590 ± 134 of 4 1.40Up
Head403 ± 234 of 4 1.00None
Eye391 ± 124 of 4 0.94None
Thoracicoabdominal ganglion477 ± 314 of 4 1.10None
Salivary gland395 ± 244 of 4 0.95None
Crop300 ± 44 of 4 0.70Down
Midgut290 ± 84 of 4 0.70Down
Tubule276 ± 164 of 4 0.70Down
Hindgut291 ± 74 of 4 0.70Down
Heart389 ± 234 of 4 0.94None
Fat body224 ± 314 of 4 0.54Down
Ovary550 ± 94 of 4 1.30Up
Testis236 ± 54 of 4 0.60Down
Male accessory glands251 ± 84 of 4 0.60Down
Virgin spermatheca219 ± 54 of 4 0.53Down
Mated spermatheca283 ± 224 of 4 0.68Down
Adult carcass477 ± 174 of 4 1.10Up
Larval CNS564 ± 94 of 4 1.36Up
Larval Salivary gland537 ± 224 of 4 1.29Up
Larval midgut268 ± 74 of 4 0.65Down
Larval tubule224 ± 84 of 4 0.50Down
Larval hindgut372 ± 64 of 4 0.90Down
Larval fat body256 ± 144 of 4 0.60Down
Larval trachea568 ± 194 of 4 1.37Up
Larval carcass672 ± 694 of 4 1.62Up
S2 cells (growing)1268 ± 244 of 4 3.05Up
Whole fly415 ± 104 of 4

Looking for CG9765-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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