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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9766-RB through 18771 annotations produced 1 hits



/// (CG9766 /// DsimCG9766):

Annotation Number : CG9766
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037229
Gbrowse : chr3R:94942-103435 (-) // 100.0 //
Probeset : 1631666_s_at
Accessions : protein= NP_001097672; /// NP_649448; /// NP_730799;, nucleotide= NM_001104202; /// NM_141191; /// NM_164326;
FlyMine data for FBgn0037229.
BDGP gene expression has embryonic in situ data for CG9766: 4 pix of staining in 1 body parts.
Homophila reports that CG9766 is a close match (3e-11) to human gene ANK1;SPH2 (NP_065209), a gene associated with Spherocytosis-2 (3).
VDRC has 3 RNAi stocks for FBgn0037229 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain39 ± 14 of 4 1.70None
Head75 ± 84 of 4 3.20Up
Eye47 ± 94 of 4 1.99None
Thoracicoabdominal ganglion21 ± 24 of 4 0.90None
Salivary gland4 ± 30 of 4 0.19Down
Crop2 ± 00 of 4 0.10Down
Midgut0 ± 00 of 4 0.00Down
Tubule2 ± 00 of 4 0.10Down
Hindgut3 ± 10 of 4 0.20Down
Heart66 ± 34 of 4 2.80Up
Fat body202 ± 184 of 4 8.55Up
Ovary1 ± 00 of 4 0.10Down
Testis85 ± 64 of 4 3.60Up
Male accessory glands4 ± 20 of 4 0.20Down
Virgin spermatheca157 ± 94 of 4 6.66Up
Mated spermatheca182 ± 244 of 4 7.70Up
Adult carcass31 ± 14 of 4 1.30Up
Larval CNS2 ± 20 of 4 0.09Down
Larval Salivary gland1 ± 00 of 4 0.05Down
Larval midgut1 ± 00 of 4 0.08Down
Larval tubule1 ± 00 of 4 0.00Down
Larval hindgut4 ± 10 of 4 0.19Down
Larval fat body61 ± 74 of 4 2.60Up
Larval trachea4 ± 20 of 4 0.18Down
Larval carcass1 ± 00 of 4 0.07Down
S2 cells (growing)7 ± 02 of 4 0.31Down
Whole fly23 ± 14 of 4

Looking for CG9766-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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