FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG9770-RA through 18771 annotations produced 1 hits

CG9770 (p):

Annotation Number : CG9770
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0086679
Gbrowse : chr3R:4486621-4489607 (-) // 100.0 //
Probeset : 1625934_at
Accessions : protein= NP_649810;, nucleotide= NM_141553;
Pathway : 0005737 // cytoplasm // inferred from direct assay
Interpro : 0031409 // pigment binding // inferred from electronic annotation
FlyMine data for FBgn0086679.
Homophila reports that CG9770 is a close match (2e-32) to human gene HPS5;KIAA1017;RU2 (NP_852609), a gene associated with Hermansky-pudlak syndrome 5, 203300 (3).
VDRC has 2 RNAi stocks for FBgn0086679 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	217 ± 7	4 of 4	2.00	Up
Head	177 ± 7	4 of 4	1.70	Up
Eye	175 ± 9	4 of 4	1.65	Up
Thoracicoabdominal ganglion	212 ± 6	4 of 4	2.00	Up
Salivary gland	123 ± 6	2 of 4	1.16	None
Crop	110 ± 5	4 of 4	1.00	None
Midgut	48 ± 3	1 of 4	0.50	Down
Tubule	214 ± 4	4 of 4	2.00	Up
Hindgut	93 ± 1	4 of 4	0.90	None
Heart	131 ± 9	4 of 4	1.24	None
Fat body	228 ± 13	4 of 4	2.14	Up
Ovary	172 ± 6	4 of 4	1.60	Up
Testis	96 ± 1	4 of 4	0.90	None
Male accessory glands	110 ± 5	4 of 4	1.00	None
Virgin spermatheca	295 ± 8	4 of 4	2.77	Up
Mated spermatheca	294 ± 35	4 of 4	2.76	Up
Adult carcass	160 ± 14	4 of 4	1.50	Up
Larval CNS	201 ± 6	4 of 4	1.88	Up
Larval Salivary gland	143 ± 4	4 of 4	1.34	Up
Larval midgut	65 ± 3	3 of 4	0.61	Down
Larval tubule	171 ± 6	4 of 4	1.60	Up
Larval hindgut	106 ± 1	4 of 4	0.99	None
Larval fat body	219 ± 7	4 of 4	2.10	Up
Larval trachea	74 ± 10	4 of 4	0.70	Down
Larval carcass	71 ± 1	4 of 4	0.67	Down
S2 cells (growing)	132 ± 2	4 of 4	1.24	Up
Whole fly	106 ± 6	4 of 4

Looking for CG9770-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720