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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9770-RA through 18771 annotations produced 1 hits



CG9770 (p):

Annotation Number : CG9770
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0086679
Gbrowse : chr3R:4486621-4489607 (-) // 100.0 //
Probeset : 1625934_at
Accessions : protein= NP_649810;, nucleotide= NM_141553;
Pathway : 0005737 // cytoplasm // inferred from direct assay
Interpro : 0031409 // pigment binding // inferred from electronic annotation
FlyMine data for FBgn0086679.
Homophila reports that CG9770 is a close match (2e-32) to human gene HPS5;KIAA1017;RU2 (NP_852609), a gene associated with Hermansky-pudlak syndrome 5, 203300 (3).
VDRC has 2 RNAi stocks for FBgn0086679 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain217 74 of 4 2.00Up
Head177 74 of 4 1.70Up
Eye175 94 of 4 1.65Up
Thoracicoabdominal ganglion212 64 of 4 2.00Up
Salivary gland123 62 of 4 1.16None
Crop110 54 of 4 1.00None
Midgut48 31 of 4 0.50Down
Tubule214 44 of 4 2.00Up
Hindgut93 14 of 4 0.90None
Heart131 94 of 4 1.24None
Fat body228 134 of 4 2.14Up
Ovary172 64 of 4 1.60Up
Testis96 14 of 4 0.90None
Male accessory glands110 54 of 4 1.00None
Virgin spermatheca295 84 of 4 2.77Up
Mated spermatheca294 354 of 4 2.76Up
Adult carcass160 144 of 4 1.50Up
Larval CNS201 64 of 4 1.88Up
Larval Salivary gland143 44 of 4 1.34Up
Larval midgut65 33 of 4 0.61Down
Larval tubule171 64 of 4 1.60Up
Larval hindgut106 14 of 4 0.99None
Larval fat body219 74 of 4 2.10Up
Larval trachea74 104 of 4 0.70Down
Larval carcass71 14 of 4 0.67Down
S2 cells (growing)132 24 of 4 1.24Up
Whole fly106 64 of 4

Looking for CG9770-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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