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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9772-RB through 18771 annotations produced 1 hits



(CG9772):

Annotation Number : CG9772
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037236
Gbrowse : chr3R:161142-165287 (-) // 100.0 //
Probeset : 1637091_a_at
Accessions : protein= NP_001036659; /// NP_649457; /// NP_730815; /// NP_730816;, nucleotide= NM_001043194; /// NM_141200; /// NM_164340; /// NM_164341;
Pathway : 0019005 // SCF ubiquitin ligase complex // inferred from sequence or structural similarity
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0037236.
BioGrid reports that CG9772 interacts with CG9790 .
TRiP has 2 RNAi stocks for FBgn0037236 available for purchase.
VDRC has 2 RNAi stocks for FBgn0037236 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain12 ± 14 of 4 0.00Down
Head30 ± 24 of 4 0.10Down
Eye23 ± 03 of 4 0.07Down
Thoracicoabdominal ganglion20 ± 04 of 4 0.10Down
Salivary gland30 ± 52 of 4 0.09Down
Crop48 ± 34 of 4 0.10Down
Midgut88 ± 54 of 4 0.30Down
Tubule49 ± 74 of 4 0.10Down
Hindgut44 ± 24 of 4 0.10Down
Heart43 ± 42 of 4 0.13Down
Fat body39 ± 64 of 4 0.12Down
Ovary706 ± 134 of 4 2.10Up
Testis26 ± 24 of 4 0.10Down
Male accessory glands15 ± 21 of 4 0.00Down
Virgin spermatheca56 ± 24 of 4 0.17Down
Mated spermatheca53 ± 64 of 4 0.16Down
Adult carcass45 ± 84 of 4 0.10Down
Larval CNS207 ± 84 of 4 0.61Down
Larval Salivary gland243 ± 214 of 4 0.72Down
Larval midgut40 ± 34 of 4 0.12Down
Larval tubule48 ± 24 of 4 0.10Down
Larval hindgut96 ± 44 of 4 0.29Down
Larval fat body28 ± 24 of 4 0.10Down
Larval trachea169 ± 124 of 4 0.50Down
Larval carcass130 ± 84 of 4 0.38Down
S2 cells (growing)247 ± 34 of 4 0.73Down
Whole fly339 ± 74 of 4

Looking for CG9772-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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