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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9780-RA through 18771 annotations produced 2 hits



Neprilysin (CG9780):

Annotation Number : CG9780
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037230
Gbrowse : chr3R:117995-120558 (-) // 100.0 //
Probeset : 1637385_a_at
Accessions : protein= NP_649449;, nucleotide= NM_141192;
Interpro : "0008237 // metallopeptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferr
FlyMine data for FBgn0037230.
BDGP gene expression has embryonic in situ data for CG9780: 13 pix of staining in 2 body parts.
VDRC has 2 RNAi stocks for FBgn0037230 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain13 11 of 4 0.10Down
Head431 174 of 4 3.40Up
Eye314 364 of 4 2.50Up
Thoracicoabdominal ganglion16 21 of 4 0.10Down
Salivary gland4 10 of 4 0.03Down
Crop13 20 of 4 0.10Down
Midgut3 10 of 4 0.00Down
Tubule10 20 of 4 0.10Down
Hindgut51 44 of 4 0.40Down
Heart376 164 of 4 3.00Up
Fat body960 1714 of 4 7.64Up
Ovary0 00 of 4 0.00Down
Testis14 23 of 4 0.10Down
Male accessory glands3 10 of 4 0.00Down
Virgin spermatheca1110 664 of 4 8.83Up
Mated spermatheca797 854 of 4 6.35Up
Adult carcass614 504 of 4 4.90Up
Larval CNS2 20 of 4 0.02Down
Larval Salivary gland5 30 of 4 0.05Down
Larval midgut2 00 of 4 0.02Down
Larval tubule1 00 of 4 0.00Down
Larval hindgut9 30 of 4 0.07Down
Larval fat body11 41 of 4 0.10Down
Larval trachea13 110 of 4 0.10Down
Larval carcass1 00 of 4 0.02Down
S2 cells (growing)1 00 of 4 0.01Down
Whole fly125 144 of 4



Neprilysin (CG9780):

Annotation Number : CG9780
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037230
Gbrowse : chr3R:117995-120558 (-) // 100.0 //
Probeset : 1633206_at
Accessions : protein= NP_649449;, nucleotide= NM_141192;
Interpro : "0008237 // metallopeptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferr
FlyMine data for FBgn0037230.
BDGP gene expression has embryonic in situ data for CG9780: 13 pix of staining in 2 body parts.
VDRC has 2 RNAi stocks for FBgn0037230 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain9 00 of 4 0.10Down
Head296 244 of 4 3.50Up
Eye279 364 of 4 3.27Up
Thoracicoabdominal ganglion9 21 of 4 0.10Down
Salivary gland3 10 of 4 0.04Down
Crop5 11 of 4 0.10Down
Midgut0 00 of 4 0.00Down
Tubule5 10 of 4 0.10Down
Hindgut28 24 of 4 0.30Down
Heart361 124 of 4 4.23Up
Fat body998 1224 of 411.69Up
Ovary1 00 of 4 0.00Down
Testis10 03 of 4 0.10Down
Male accessory glands2 00 of 4 0.00Down
Virgin spermatheca1412 514 of 416.54Up
Mated spermatheca939 864 of 411.00Up
Adult carcass454 334 of 4 5.30Up
Larval CNS0 00 of 4 0.01Down
Larval Salivary gland0 00 of 4 0.01Down
Larval midgut0 00 of 4 0.01Down
Larval tubule0 00 of 4 0.00Down
Larval hindgut3 10 of 4 0.05Down
Larval fat body3 20 of 4 0.00Down
Larval trachea2 40 of 4 0.03Down
Larval carcass0 00 of 4 0.01Down
S2 cells (growing)2 10 of 4 0.03Down
Whole fly85 124 of 4

Looking for CG9780-RA. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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