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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9784-RA through 18771 annotations produced 1 hits



(CG9784):

Annotation Number : CG9784
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030761
Gbrowse : chrX:16490554-16492503 (-) // 100.0 //
Probeset : 1636632_at
Accessions : protein= NP_573135;, nucleotide= NM_132907;
Interpro : 0004437 // inositol or phosphatidylinositol phosphatase activity // inferred from electronic annotation /// 0005515 // p
FlyMine data for FBgn0030761.
BDGP gene expression has embryonic in situ data for CG9784: 4 pix of staining in 1 body parts.
Homophila reports that CG9784 is a close match (2e-32) to human gene LOCR;NPHL2;OCRL;OCRL1 (NP_001578), a gene associated with Dent syndrome, 300009 (3);Lowe syndrome, 309000 (3).
TRiP has 1 RNAi stocks for FBgn0030761 available for purchase.
VDRC has 2 RNAi stocks for FBgn0030761 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain30 ± 24 of 4 1.30None
Head22 ± 54 of 4 1.00None
Eye30 ± 14 of 4 1.32None
Thoracicoabdominal ganglion36 ± 34 of 4 1.60None
Salivary gland69 ± 73 of 4 2.98Up
Crop49 ± 14 of 4 2.20Up
Midgut43 ± 44 of 4 1.90Up
Tubule20 ± 22 of 4 0.90None
Hindgut73 ± 34 of 4 3.20Up
Heart23 ± 24 of 4 1.00None
Fat body32 ± 64 of 4 1.38None
Ovary36 ± 14 of 4 1.60None
Testis12 ± 14 of 4 0.50None
Male accessory glands40 ± 24 of 4 1.70Up
Virgin spermatheca15 ± 12 of 4 0.66None
Mated spermatheca18 ± 34 of 4 0.81None
Adult carcass64 ± 134 of 4 2.80None
Larval CNS22 ± 24 of 4 0.97None
Larval Salivary gland55 ± 64 of 4 2.38Up
Larval midgut70 ± 34 of 4 3.04Up
Larval tubule47 ± 44 of 4 2.00Up
Larval hindgut119 ± 134 of 4 5.16Up
Larval fat body17 ± 32 of 4 0.80None
Larval trachea32 ± 54 of 4 1.39None
Larval carcass38 ± 34 of 4 1.64Up
S2 cells (growing)54 ± 24 of 4 2.34Up
Whole fly23 ± 44 of 4

Looking for CG9784-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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