FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG9791-RA through 18771 annotations produced 1 hits

(CG9791):

Annotation Number : CG9791
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037232
Gbrowse : chr3R:137257-140096 (+) // 100.0 //
Probeset : 1637793_at
Accessions : protein= NP_649452;, nucleotide= NM_141195;
Pathway : 0005634 // nucleus // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annot
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred fro
FlyMine data for FBgn0037232.
VDRC has 1 RNAi stocks for FBgn0037232 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	36 ± 1	4 of 4	0.80	Down
Head	24 ± 1	4 of 4	0.50	Down
Eye	15 ± 0	4 of 4	0.34	Down
Thoracicoabdominal ganglion	38 ± 2	4 of 4	0.80	None
Salivary gland	65 ± 6	4 of 4	1.43	Up
Crop	28 ± 3	4 of 4	0.60	Down
Midgut	42 ± 3	4 of 4	0.90	None
Tubule	56 ± 3	4 of 4	1.20	Up
Hindgut	32 ± 3	4 of 4	0.70	Down
Heart	26 ± 4	4 of 4	0.58	Down
Fat body	35 ± 7	4 of 4	0.78	None
Ovary	68 ± 0	4 of 4	1.50	Up
Testis	25 ± 2	4 of 4	0.60	Down
Male accessory glands	23 ± 2	3 of 4	0.50	Down
Virgin spermatheca	23 ± 2	3 of 4	0.51	Down
Mated spermatheca	33 ± 2	4 of 4	0.73	Down
Adult carcass	34 ± 2	4 of 4	0.80	Down
Larval CNS	35 ± 6	4 of 4	0.79	None
Larval Salivary gland	46 ± 3	4 of 4	1.01	None
Larval midgut	39 ± 1	4 of 4	0.85	None
Larval tubule	28 ± 2	4 of 4	0.60	Down
Larval hindgut	44 ± 5	4 of 4	0.97	None
Larval fat body	21 ± 3	2 of 4	0.50	Down
Larval trachea	25 ± 4	4 of 4	0.55	Down
Larval carcass	24 ± 4	4 of 4	0.53	Down
S2 cells (growing)	33 ± 2	4 of 4	0.74	Down
Whole fly	45 ± 2	4 of 4

Looking for CG9791-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720