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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9796-RA through 18771 annotations produced 1 hits



(CG9796):

Annotation Number : CG9796
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038149
Gbrowse : chr3R:9224246-9227580 (-) // 100.0 //
Probeset : 1630370_at
Accessions : protein= NP_650287;, nucleotide= NM_142030;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0038149.
BDGP gene expression has embryonic in situ data for CG9796: 18 pix of staining in 13 body parts.
VDRC has 1 RNAi stocks for FBgn0038149 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain193 ± 64 of 4 0.20Down
Head791 ± 294 of 4 1.00None
Eye597 ± 364 of 4 0.75Down
Thoracicoabdominal ganglion126 ± 64 of 4 0.20Down
Salivary gland1906 ± 324 of 4 2.40Up
Crop787 ± 284 of 4 1.00None
Midgut57 ± 14 of 4 0.10Down
Tubule30 ± 53 of 4 0.00Down
Hindgut1020 ± 294 of 4 1.30Up
Heart624 ± 284 of 4 0.78Down
Fat body244 ± 164 of 4 0.31Down
Ovary1222 ± 174 of 4 1.50Up
Testis270 ± 84 of 4 0.30Down
Male accessory glands859 ± 704 of 4 1.10None
Virgin spermatheca501 ± 264 of 4 0.63Down
Mated spermatheca760 ± 994 of 4 0.96None
Adult carcass432 ± 254 of 4 0.50Down
Larval CNS304 ± 284 of 4 0.38Down
Larval Salivary gland2327 ± 1034 of 4 2.93Up
Larval midgut135 ± 94 of 4 0.17Down
Larval tubule26 ± 34 of 4 0.00Down
Larval hindgut2196 ± 114 of 4 2.76Up
Larval fat body61 ± 104 of 4 0.10Down
Larval trachea3417 ± 1624 of 4 4.29Up
Larval carcass1870 ± 794 of 4 2.35Up
S2 cells (growing)305 ± 84 of 4 0.38Down
Whole fly795 ± 314 of 4

Looking for CG9796-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime