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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9797-RA through 18771 annotations produced 1 hits



(CG9797):

Annotation Number : CG9797
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037621
Gbrowse : chr3R:4555511-4557416 (-) // 100.0 //
Probeset : 1639354_at
Accessions : protein= NP_649825;, nucleotide= NM_141568;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annot
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from p
FlyMine data for FBgn0037621.
BDGP gene expression has embryonic in situ data for CG9797: 27 pix of staining in 15 body parts.
Homophila reports that CG9797 is a close match (3e-11) to human gene HSAL4;SALL4 (NP_065169), a gene associated with Duane-radial ray syndrome, 607323 (3);IVIC syndrome, 147750 (3).
TRiP has 2 RNAi stocks for FBgn0037621 available for purchase.
VDRC has 1 RNAi stocks for FBgn0037621 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain156 34 of 4 1.30Up
Head102 34 of 4 0.80Down
Eye121 14 of 4 1.00None
Thoracicoabdominal ganglion140 24 of 4 1.20Up
Salivary gland160 54 of 4 1.33Up
Crop119 34 of 4 1.00None
Midgut125 34 of 4 1.00None
Tubule144 54 of 4 1.20Up
Hindgut88 24 of 4 0.70Down
Heart79 24 of 4 0.66Down
Fat body96 114 of 4 0.79Down
Ovary237 74 of 4 2.00Up
Testis84 34 of 4 0.70Down
Male accessory glands164 34 of 4 1.40Up
Virgin spermatheca124 34 of 4 1.03None
Mated spermatheca133 74 of 4 1.10None
Adult carcass90 14 of 4 0.70Down
Larval CNS294 194 of 4 2.43Up
Larval Salivary gland477 454 of 4 3.94Up
Larval midgut94 44 of 4 0.78Down
Larval tubule149 14 of 4 1.20Up
Larval hindgut81 24 of 4 0.67Down
Larval fat body131 64 of 4 1.10None
Larval trachea160 114 of 4 1.32Up
Larval carcass108 44 of 4 0.89None
S2 cells (growing)220 84 of 4 1.82Up
Whole fly121 44 of 4

Looking for CG9797-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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