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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9801-RA through 18771 annotations produced 1 hits



(CG9801):

Annotation Number : CG9801
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037623
Gbrowse : chr3R:4561600-4573372 (-) // 100.0 //
Probeset : 1641304_s_at
Accessions : protein= NP_649827; /// NP_731278; /// NP_996184;, nucleotide= NM_141570; /// NM_169239; /// NM_206462;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation
FlyMine data for FBgn0037623.
VDRC has 1 RNAi stocks for FBgn0037623 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain305 ± 34 of 4 3.20Up
Head148 ± 34 of 4 1.60Up
Eye121 ± 14 of 4 1.29Up
Thoracicoabdominal ganglion314 ± 114 of 4 3.30Up
Salivary gland89 ± 24 of 4 0.96None
Crop297 ± 14 of 4 3.20Up
Midgut21 ± 14 of 4 0.20Down
Tubule1064 ± 1204 of 411.30Up
Hindgut294 ± 74 of 4 3.10Up
Heart58 ± 34 of 4 0.63Down
Fat body62 ± 134 of 4 0.67Down
Ovary126 ± 34 of 4 1.30Up
Testis56 ± 14 of 4 0.60Down
Male accessory glands130 ± 54 of 4 1.40Up
Virgin spermatheca71 ± 44 of 4 0.76Down
Mated spermatheca84 ± 84 of 4 0.90None
Adult carcass74 ± 14 of 4 0.80Down
Larval CNS400 ± 534 of 4 4.26Up
Larval Salivary gland139 ± 234 of 4 1.49None
Larval midgut127 ± 494 of 4 1.36None
Larval tubule544 ± 314 of 4 5.80Up
Larval hindgut217 ± 374 of 4 2.31Up
Larval fat body325 ± 494 of 4 3.50Up
Larval trachea165 ± 294 of 4 1.76Up
Larval carcass67 ± 164 of 4 0.71None
S2 cells (growing)7 ± 04 of 4 0.08Down
Whole fly94 ± 24 of 4

Looking for CG9801-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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