FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG9802-RA through 18771 annotations produced 1 hits

Chromosome-associated protein (Cap):

Annotation Number : CG9802
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015615
Gbrowse : chrX:16483034-16487462 (-) // 100.0 //
Probeset : 1633527_a_at
Accessions : protein= NP_523374; /// NP_727988;, nucleotide= NM_078650; /// NM_167525;
Pathway : 0005694 // chromosome // inferred from electronic annotation /// 0008278 // cohesin complex // inferred from sequence or
Interpro : "0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physi
FlyMine data for FBgn0015615.
BDGP gene expression has embryonic in situ data for Cap: 4 pix of staining in 1 body parts.
Homophila reports that CG9802 is a close match (5e-13) to human gene CDLS2;DXS423E;SMC1 (NP_006297), a gene associated with Cornelia de Lange syndrome 2, 300590 (3).
TRiP has 2 RNAi stocks for FBgn0015615 available for purchase.
VDRC has 3 RNAi stocks for FBgn0015615 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	159 ± 2	4 of 4	1.50	Up
Head	65 ± 1	4 of 4	0.60	Down
Eye	56 ± 4	4 of 4	0.54	Down
Thoracicoabdominal ganglion	113 ± 1	4 of 4	1.10	None
Salivary gland	57 ± 7	4 of 4	0.56	Down
Crop	83 ± 1	4 of 4	0.80	Down
Midgut	69 ± 4	4 of 4	0.70	Down
Tubule	51 ± 2	4 of 4	0.50	Down
Hindgut	63 ± 5	4 of 4	0.60	Down
Heart	36 ± 4	4 of 4	0.35	Down
Fat body	35 ± 1	4 of 4	0.35	Down
Ovary	307 ± 9	4 of 4	3.00	Up
Testis	20 ± 1	3 of 4	0.20	Down
Male accessory glands	37 ± 3	4 of 4	0.40	Down
Virgin spermatheca	47 ± 1	4 of 4	0.46	Down
Mated spermatheca	51 ± 4	4 of 4	0.50	Down
Adult carcass	47 ± 3	4 of 4	0.50	Down
Larval CNS	271 ± 11	4 of 4	2.61	Up
Larval Salivary gland	67 ± 3	4 of 4	0.65	Down
Larval midgut	38 ± 5	4 of 4	0.37	Down
Larval tubule	56 ± 2	4 of 4	0.50	Down
Larval hindgut	58 ± 2	4 of 4	0.56	Down
Larval fat body	41 ± 3	4 of 4	0.40	Down
Larval trachea	79 ± 7	4 of 4	0.76	Down
Larval carcass	64 ± 4	4 of 4	0.63	Down
S2 cells (growing)	147 ± 3	4 of 4	1.42	Up
Whole fly	103 ± 5	4 of 4

Looking for CG9802-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720