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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9805-RA through 18771 annotations produced 1 hits



eIF3-S10 (eIF3-S10):

Annotation Number : CG9805
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037249
Gbrowse : chr3R:255623-259652 (-) // 100.0 //
Probeset : 1631404_at
Accessions : protein= NP_649470;, nucleotide= NM_141213;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from sequence or structur
Interpro : 0003743 // translation initiation factor activity // inferred from sequence or structural similarity /// 0003743 // tran
FlyMine data for FBgn0037249.
TRiP has 3 RNAi stocks for FBgn0037249 available for purchase.
VDRC has 1 RNAi stocks for FBgn0037249 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain397 34 of 4 0.80Down
Head360 164 of 4 0.70Down
Eye749 464 of 4 1.45Up
Thoracicoabdominal ganglion476 74 of 4 0.90None
Salivary gland852 314 of 4 1.65Up
Crop392 134 of 4 0.80Down
Midgut288 154 of 4 0.60Down
Tubule736 154 of 4 1.40Up
Hindgut401 94 of 4 0.80Down
Heart553 204 of 4 1.07None
Fat body617 324 of 4 1.19Up
Ovary620 124 of 4 1.20Up
Testis310 64 of 4 0.60Down
Male accessory glands1209 194 of 4 2.30Up
Virgin spermatheca1407 234 of 4 2.72Up
Mated spermatheca1331 354 of 4 2.57Up
Adult carcass487 64 of 4 0.90None
Larval CNS683 164 of 4 1.32Up
Larval Salivary gland1492 374 of 4 2.89Up
Larval midgut271 164 of 4 0.53Down
Larval tubule729 304 of 4 1.40Up
Larval hindgut717 244 of 4 1.39Up
Larval fat body444 444 of 4 0.90None
Larval trachea875 394 of 4 1.69Up
Larval carcass654 204 of 4 1.27Up
S2 cells (growing)1025 324 of 4 1.98Up
Whole fly517 214 of 4

Looking for CG9805-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime