FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG9821-RB through 18771 annotations produced 1 hits

/// (CG9821 /// DsimCG9821):

Annotation Number : CG9821
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037636
Gbrowse : chr3R:4643368-4646386 (-) // 99.7 //
Probeset : 1634992_s_at
Accessions : protein= NP_788601; /// NP_788602;, nucleotide= NM_176424; /// NM_176425;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0037636.
BDGP gene expression has embryonic in situ data for CG9821: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0037636 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	1241 ± 30	4 of 4	3.50	Up
Head	281 ± 42	4 of 4	0.80	None
Eye	2018 ± 117	4 of 4	5.63	Up
Thoracicoabdominal ganglion	1302 ± 98	4 of 4	3.60	Up
Salivary gland	199 ± 98	4 of 4	0.56	None
Crop	937 ± 51	4 of 4	2.60	Up
Midgut	289 ± 7	4 of 4	0.80	Down
Tubule	595 ± 98	4 of 4	1.70	Up
Hindgut	589 ± 33	4 of 4	1.60	Up
Heart	1205 ± 128	4 of 4	3.36	Up
Fat body	305 ± 57	4 of 4	0.85	None
Ovary	610 ± 9	4 of 4	1.70	Up
Testis	94 ± 8	4 of 4	0.30	Down
Male accessory glands	306 ± 10	4 of 4	0.90	None
Virgin spermatheca	403 ± 17	4 of 4	1.13	None
Mated spermatheca	325 ± 11	4 of 4	0.91	None
Adult carcass	495 ± 134	4 of 4	1.40	None
Larval CNS	675 ± 171	4 of 4	1.88	Up
Larval Salivary gland	243 ± 34	4 of 4	0.68	Down
Larval midgut	196 ± 14	4 of 4	0.55	Down
Larval tubule	584 ± 36	4 of 4	1.60	Up
Larval hindgut	499 ± 45	4 of 4	1.39	Up
Larval fat body	360 ± 27	4 of 4	1.00	None
Larval trachea	1234 ± 151	4 of 4	3.44	Up
Larval carcass	237 ± 38	4 of 4	0.66	Down
S2 cells (growing)	733 ± 30	4 of 4	2.05	Up
Whole fly	358 ± 18	4 of 4

Looking for CG9821-RB. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720