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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9822-RA through 18771 annotations produced 1 hits



(CG9822):

Annotation Number : CG9822
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034623
Gbrowse : chr2R:17234433-17235356 (-) // 100.0 //
Probeset : 1627972_at
Accessions : protein= NP_611581;, nucleotide= NM_137737;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
FlyMine data for FBgn0034623.
BDGP gene expression has embryonic in situ data for CG9822: 8 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0034623 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 10 of 4 0.50None
Head2 10 of 4 0.40None
Eye10 13 of 4 2.15Up
Thoracicoabdominal ganglion2 00 of 4 0.50None
Salivary gland30 63 of 4 6.01Up
Crop12 22 of 4 2.50Up
Midgut11 10 of 4 2.30Up
Tubule11 00 of 4 2.30Up
Hindgut5 10 of 4 1.00None
Heart23 14 of 4 4.67Up
Fat body40 104 of 4 8.06Up
Ovary1 00 of 4 0.20None
Testis2 10 of 4 0.50None
Male accessory glands11 30 of 4 2.30None
Virgin spermatheca7 20 of 4 1.55None
Mated spermatheca11 20 of 4 2.18None
Adult carcass14 31 of 4 2.90None
Larval CNS1 10 of 4 0.39None
Larval Salivary gland3 10 of 4 0.68None
Larval midgut8 20 of 4 1.73None
Larval tubule5 10 of 4 1.20None
Larval hindgut21 181 of 4 4.15None
Larval fat body6 20 of 4 1.30None
Larval trachea5 20 of 4 1.05None
Larval carcass339 1734 of 466.93None
S2 cells (growing)2 10 of 4 0.51None
Whole fly5 10 of 4

Looking for CG9822-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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