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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9828-RB through 18771 annotations produced 1 hits



DnaJ homolog (DnaJ-H):

Annotation Number : CG9828
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032474
Gbrowse : chr2L:13163290-13166072 (-) // 100.0 //
Probeset : 1631328_s_at
Accessions : protein= NP_609605; /// NP_723785;, nucleotide= NM_135761; /// NM_165025;
Interpro : 0031072 // heat shock protein binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferre
FlyMine data for FBgn0032474.
VDRC has 1 RNAi stocks for FBgn0032474 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain557 ± 144 of 4 2.30Up
Head235 ± 114 of 4 1.00None
Eye429 ± 154 of 4 1.76Up
Thoracicoabdominal ganglion744 ± 214 of 4 3.00Up
Salivary gland133 ± 14 of 4 0.55Down
Crop206 ± 44 of 4 0.80None
Midgut129 ± 34 of 4 0.50Down
Tubule162 ± 84 of 4 0.70Down
Hindgut137 ± 34 of 4 0.60Down
Heart166 ± 44 of 4 0.68Down
Fat body79 ± 114 of 4 0.32Down
Ovary256 ± 94 of 4 1.10None
Testis1060 ± 404 of 4 4.30Up
Male accessory glands66 ± 44 of 4 0.30Down
Virgin spermatheca86 ± 34 of 4 0.35Down
Mated spermatheca86 ± 34 of 4 0.36Down
Adult carcass155 ± 34 of 4 0.60Down
Larval CNS95 ± 64 of 4 0.39Down
Larval Salivary gland161 ± 164 of 4 0.66Down
Larval midgut216 ± 124 of 4 0.89None
Larval tubule364 ± 164 of 4 1.50Up
Larval hindgut149 ± 64 of 4 0.61Down
Larval fat body180 ± 484 of 4 0.70None
Larval trachea146 ± 144 of 4 0.60Down
Larval carcass301 ± 644 of 4 1.23None
S2 cells (growing)82 ± 24 of 4 0.34Down
Whole fly244 ± 154 of 4

Looking for CG9828-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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