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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG9837-RA through 18771 annotations produced 1 hits


Annotation Number : CG9837
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037635
Gbrowse : chr3R:4634669-4635533 (-) // 100.0 //
Probeset : 1639101_at
Accessions : protein= NP_001163557; /// NP_649838;, nucleotide= NM_001170086; /// NM_141581;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0037635.
BDGP gene expression has embryonic in situ data for CG9837: 20 pix of staining in 6 body parts.
VDRC has 2 RNAi stocks for FBgn0037635 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain19 34 of 4 1.10None
Head104 74 of 4 5.80Up
Eye68 254 of 4 3.83None
Thoracicoabdominal ganglion15 33 of 4 0.90None
Salivary gland5 20 of 4 0.28Down
Crop2 00 of 4 0.10Down
Midgut12 40 of 4 0.70None
Tubule8 01 of 4 0.50Down
Hindgut10 13 of 4 0.60Down
Heart154 34 of 4 8.68Up
Fat body342 514 of 419.21Up
Ovary1 00 of 4 0.10Down
Testis9 32 of 4 0.50None
Male accessory glands2 10 of 4 0.10Down
Virgin spermatheca253 294 of 414.20Up
Mated spermatheca150 114 of 4 8.45Up
Adult carcass141 194 of 4 7.90Up
Larval CNS2 20 of 4 0.15Down
Larval Salivary gland16 22 of 4 0.94None
Larval midgut38 24 of 4 2.18Up
Larval tubule17 04 of 4 1.00None
Larval hindgut15 14 of 4 0.89None
Larval fat body1316 2324 of 473.90Up
Larval trachea9 82 of 4 0.52None
Larval carcass1 00 of 4 0.10Down
S2 cells (growing)84 34 of 4 4.74Up
Whole fly17 04 of 4

Looking for CG9837-RA. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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