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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG9841-RA through 18771 annotations produced 1 hits

EfSec (EfSec):

Annotation Number : CG9841
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034627
Gbrowse : chr2R:17272059-17273720 (-) // 100.0 //
Probeset : 1633739_at
Accessions : protein= NP_611584;, nucleotide= NM_137740;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003746 // translation elongation factor activi
FlyMine data for FBgn0034627.
BDGP gene expression has embryonic in situ data for EfSec: 8 pix of staining in 1 body parts.
Homophila reports that CG9841 is a close match (2e-20) to human gene COXPD4;EFTU;TUFM (NP_003312), a gene associated with Combined oxidative phosphorylation deficiency 4, 610678 (3).
TRiP has 2 RNAi stocks for FBgn0034627 available for purchase.
VDRC has 1 RNAi stocks for FBgn0034627 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain20 24 of 4 1.10None
Head12 04 of 4 0.60None
Eye23 34 of 4 1.19None
Thoracicoabdominal ganglion30 24 of 4 1.50Up
Salivary gland40 64 of 4 2.08Up
Crop19 14 of 4 1.00None
Midgut22 14 of 4 1.10None
Tubule27 23 of 4 1.40Up
Hindgut15 14 of 4 0.80None
Heart21 34 of 4 1.10None
Fat body22 33 of 4 1.14None
Ovary43 24 of 4 2.20Up
Testis25 14 of 4 1.30None
Male accessory glands25 34 of 4 1.30None
Virgin spermatheca21 14 of 4 1.11None
Mated spermatheca21 24 of 4 1.08None
Adult carcass14 11 of 4 0.70None
Larval CNS35 44 of 4 1.84Up
Larval Salivary gland20 14 of 4 1.02None
Larval midgut29 24 of 4 1.49Up
Larval tubule45 14 of 4 2.30Up
Larval hindgut24 34 of 4 1.23None
Larval fat body35 54 of 4 1.80Up
Larval trachea33 44 of 4 1.70Up
Larval carcass19 22 of 4 1.02None
S2 cells (growing)22 14 of 4 1.14None
Whole fly19 24 of 4

Looking for CG9841-RA. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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