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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG9856-RA through 18771 annotations produced 1 hits

Protein tyrosine phosphatase-ERK/Enhancer of Ras1 (PTP-ER):

Annotation Number : CG9856
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0016641
Gbrowse : chr2R:17506888-17511947 (-) // 100.0 //
Probeset : 1629795_at
Accessions : protein= NP_726092;, nucleotide= NM_166465;
Pathway : 0005737 // cytoplasm // inferred from direct assay
Interpro : 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine ph
FlyMine data for FBgn0016641.
BDGP gene expression has embryonic in situ data for PTP-ER: 4 pix of staining in 1 body parts.
BioGrid reports that CG9856 interacts with CG2845 CG2845 CG2845 CG2845 CG9375 CG9375 CG9375 CG9375 CG12559 CG12559 CG15793 CG15793 CG2899 CG2899 .
TRiP has 1 RNAi stocks for FBgn0016641 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain324 74 of 4 3.90Up
Head115 44 of 4 1.40Up
Eye93 24 of 4 1.12Up
Thoracicoabdominal ganglion237 44 of 4 2.80Up
Salivary gland70 44 of 4 0.84Down
Crop123 24 of 4 1.50Up
Midgut34 14 of 4 0.40Down
Tubule33 14 of 4 0.40Down
Hindgut93 24 of 4 1.10Up
Heart72 54 of 4 0.87None
Fat body85 64 of 4 1.02None
Ovary226 34 of 4 2.70Up
Testis24 14 of 4 0.30Down
Male accessory glands79 44 of 4 0.90None
Virgin spermatheca57 24 of 4 0.69Down
Mated spermatheca57 54 of 4 0.69Down
Adult carcass97 24 of 4 1.20Up
Larval CNS182 114 of 4 2.19Up
Larval Salivary gland70 34 of 4 0.84Down
Larval midgut45 24 of 4 0.54Down
Larval tubule38 14 of 4 0.50Down
Larval hindgut88 24 of 4 1.06None
Larval fat body53 24 of 4 0.60Down
Larval trachea71 34 of 4 0.86Down
Larval carcass95 54 of 4 1.15None
S2 cells (growing)89 14 of 4 1.08None
Whole fly83 24 of 4

Looking for CG9856-RA. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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