FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG9876-RA through 18771 annotations produced 1 hits

(CG9876):

Annotation Number : CG9876
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034821
Gbrowse : chr2R:18977625-18981785 (-) // 100.0 //
Probeset : 1624085_at
Accessions : protein= NP_611756;, nucleotide= NM_137912;
Pathway : DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electr
Interpro : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic
FlyMine data for FBgn0034821.
BDGP gene expression has embryonic in situ data for CG9876: 32 pix of staining in 5 body parts.
Homophila reports that CG9876 is a close match (4e-12) to human gene EMX2 (NP_004089), a gene associated with Schizencephaly, 269160 (3).
VDRC has 2 RNAi stocks for FBgn0034821 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	6 ± 1	0 of 4	1.30	None
Head	11 ± 2	1 of 4	2.50	Up
Eye	3 ± 1	0 of 4	0.67	None
Thoracicoabdominal ganglion	3 ± 1	0 of 4	0.80	None
Salivary gland	5 ± 1	0 of 4	1.15	None
Crop	2 ± 1	0 of 4	0.40	None
Midgut	2 ± 1	0 of 4	0.60	None
Tubule	3 ± 0	0 of 4	0.70	Down
Hindgut	1 ± 0	0 of 4	0.40	None
Heart	2 ± 0	0 of 4	0.47	None
Fat body	1 ± 0	0 of 4	0.26	None
Ovary	1 ± 0	0 of 4	0.30	None
Testis	7 ± 2	2 of 4	1.60	None
Male accessory glands	2 ± 0	0 of 4	0.40	None
Virgin spermatheca	4 ± 1	0 of 4	0.92	None
Mated spermatheca	1 ± 0	0 of 4	0.37	None
Adult carcass	12 ± 7	1 of 4	2.60	None
Larval CNS	1 ± 0	0 of 4	0.36	None
Larval Salivary gland	7 ± 2	0 of 4	1.61	None
Larval midgut	3 ± 1	0 of 4	0.65	None
Larval tubule	2 ± 0	0 of 4	0.50	None
Larval hindgut	1 ± 0	0 of 4	0.42	None
Larval fat body	7 ± 2	0 of 4	1.60	None
Larval trachea	14 ± 7	4 of 4	3.18	None
Larval carcass	11 ± 3	0 of 4	2.49	None
S2 cells (growing)	1 ± 0	0 of 4	0.36	None
Whole fly	4 ± 2	0 of 4

Looking for CG9876-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720