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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9881-RA through 18771 annotations produced 1 hits



CRF-like peptide /// p16-ARC (Dh /// p16-ARC):

Annotation Number : CG9881
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031437
Gbrowse : chr2L:2580290-2581114 (+) // 100.0 //
Probeset : 1634204_at
Accessions : protein= NP_608693;, nucleotide= NM_134849;
Pathway : engulfment // inferred from mutant phenotype /// 0007218 // neuropeptide signaling pathway // inferred from sequence si
Interpro : 0005576 // extracellular region // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from elec
FlyMine data for FBgn0031437.
BDGP gene expression has embryonic in situ data for p16-ARC: 4 pix of staining in 1 body parts.
TRiP has 1 RNAi stocks for FBgn0031437 available for purchase.
VDRC has 2 RNAi stocks for FBgn0031437 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain162 14 of 4 0.80Down
Head152 24 of 4 0.70Down
Eye210 64 of 4 1.01None
Thoracicoabdominal ganglion146 24 of 4 0.70Down
Salivary gland255 224 of 4 1.23None
Crop275 24 of 4 1.30Up
Midgut409 54 of 4 2.00Up
Tubule453 124 of 4 2.20Up
Hindgut254 64 of 4 1.20Up
Heart205 34 of 4 0.98None
Fat body89 104 of 4 0.43Down
Ovary271 44 of 4 1.30Up
Testis274 74 of 4 1.30Up
Male accessory glands308 164 of 4 1.50Up
Virgin spermatheca173 114 of 4 0.83None
Mated spermatheca187 124 of 4 0.90None
Adult carcass124 34 of 4 0.60Down
Larval CNS276 124 of 4 1.33Up
Larval Salivary gland479 114 of 4 2.30Up
Larval midgut492 184 of 4 2.36Up
Larval tubule537 154 of 4 2.60Up
Larval hindgut366 124 of 4 1.76Up
Larval fat body271 94 of 4 1.30Up
Larval trachea457 134 of 4 2.19Up
Larval carcass245 94 of 4 1.18Up
S2 cells (growing)479 104 of 4 2.30Up
Whole fly208 94 of 4

Looking for CG9881-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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