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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9891-RA through 18771 annotations produced 1 hits



yellow-d2 (yellow-d2):

Annotation Number : CG9891
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034856
Gbrowse : chr2R:19268721-19270116 (+) // 100.0 //
Probeset : 1629932_at
Accessions : protein= NP_611788;, nucleotide= NM_137944;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0034856.
VDRC has 2 RNAi stocks for FBgn0034856 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 10 of 4 1.30None
Head2 10 of 4 1.70None
Eye4 20 of 4 2.77None
Thoracicoabdominal ganglion4 10 of 4 2.40None
Salivary gland10 10 of 4 5.80Up
Crop8 00 of 4 4.90Up
Midgut7 22 of 4 4.20None
Tubule4 00 of 4 2.40Up
Hindgut5 10 of 4 3.00None
Heart1 00 of 4 0.79None
Fat body4 40 of 4 2.66None
Ovary2 00 of 4 1.30None
Testis3 00 of 4 2.20None
Male accessory glands2 00 of 4 1.40None
Virgin spermatheca9 14 of 4 5.16Up
Mated spermatheca12 13 of 4 7.19Up
Adult carcass2 10 of 4 1.60None
Larval CNS4 10 of 4 2.39Up
Larval Salivary gland1 00 of 4 0.86None
Larval midgut6 10 of 4 3.46Up
Larval tubule3 10 of 4 2.10None
Larval hindgut40 94 of 422.93Up
Larval fat body10 20 of 4 5.70Up
Larval trachea111 494 of 463.70Up
Larval carcass2006 2034 of 41146.71Up
S2 cells (growing)4 10 of 4 2.47None
Whole fly1 00 of 4

Looking for CG9891-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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