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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9901-RA through 18771 annotations produced 1 hits



Actin-related protein 14D (Arp14D):

Annotation Number : CG9901
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0011742
Gbrowse : chrX:16442813-16448001 (-) // 100.0 //
Probeset : 1631049_at
Accessions : protein= NP_001097001; /// NP_523372;, nucleotide= NM_001103531; /// NM_078648;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic anno
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003779 // actin binding // inferred from seque
FlyMine data for FBgn0011742.
Homophila reports that CG9901 is a close match (1e-102) to human gene ACTA2;ACTSA;AAT6 (NP_001604), a gene associated with Aortic aneurysm, familial thoracic 6, 611788 (3).
TRiP has 1 RNAi stocks for FBgn0011742 available for purchase.
VDRC has 3 RNAi stocks for FBgn0011742 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain155 44 of 4 0.60Down
Head63 34 of 4 0.30Down
Eye40 24 of 4 0.16Down
Thoracicoabdominal ganglion103 64 of 4 0.40Down
Salivary gland118 74 of 4 0.47Down
Crop116 64 of 4 0.50Down
Midgut477 64 of 4 1.90Up
Tubule380 334 of 4 1.50Up
Hindgut166 34 of 4 0.70Down
Heart75 44 of 4 0.30Down
Fat body115 84 of 4 0.46Down
Ovary739 14 of 4 2.90Up
Testis188 34 of 4 0.70Down
Male accessory glands186 54 of 4 0.70Down
Virgin spermatheca151 54 of 4 0.60Down
Mated spermatheca187 164 of 4 0.75Down
Adult carcass69 64 of 4 0.30Down
Larval CNS205 154 of 4 0.82Down
Larval Salivary gland225 114 of 4 0.89None
Larval midgut576 374 of 4 2.29Up
Larval tubule286 64 of 4 1.10None
Larval hindgut281 84 of 4 1.12None
Larval fat body265 164 of 4 1.10None
Larval trachea115 184 of 4 0.46Down
Larval carcass140 14 of 4 0.56Down
S2 cells (growing)345 64 of 4 1.37Up
Whole fly252 124 of 4

Looking for CG9901-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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