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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG9904-RA through 18771 annotations produced 1 hits


Annotation Number : CG9904
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040336
Gbrowse : chrX:2513832-2516178 (+) // 100.0 //
Probeset : 1628623_at
Accessions : protein= NP_570012;, nucleotide= NM_130656;
FlyMine data for FBgn0040336.
BDGP gene expression has embryonic in situ data for EG:BACR7C10.1: 4 pix of staining in 1 body parts.
Homophila reports that CG9904 is a close match (7e-46) to human gene BSCL2;HMN5;SPG17 (NP_116056), a gene associated with Lipodystrophy, congenital generalized, type 2, 269700 (3);Neuropathy, distal hereditary motor, type V, 600794 (3);Silver spastic paraplegia syndrome, 270685 (3).
TRiP has 1 RNAi stocks for FBgn0040336 available for purchase.
VDRC has 2 RNAi stocks for FBgn0040336 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain33 24 of 4 0.30Down
Head68 24 of 4 0.60Down
Eye72 24 of 4 0.61Down
Thoracicoabdominal ganglion37 04 of 4 0.30Down
Salivary gland56 24 of 4 0.48Down
Crop187 44 of 4 1.60Up
Midgut444 164 of 4 3.80Up
Tubule81 44 of 4 0.70Down
Hindgut177 64 of 4 1.50Up
Heart109 64 of 4 0.92None
Fat body207 54 of 4 1.75Up
Ovary149 64 of 4 1.30Up
Testis7 21 of 4 0.10Down
Male accessory glands68 24 of 4 0.60Down
Virgin spermatheca83 34 of 4 0.71Down
Mated spermatheca81 44 of 4 0.69Down
Adult carcass121 24 of 4 1.00None
Larval CNS44 34 of 4 0.38Down
Larval Salivary gland56 54 of 4 0.47Down
Larval midgut553 704 of 4 4.68Up
Larval tubule49 14 of 4 0.40Down
Larval hindgut67 54 of 4 0.57Down
Larval fat body59 34 of 4 0.50Down
Larval trachea46 34 of 4 0.40Down
Larval carcass34 14 of 4 0.29Down
S2 cells (growing)170 14 of 4 1.44Up
Whole fly118 74 of 4

Looking for CG9904-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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