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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9911-RB through 18771 annotations produced 1 hits



(CG9911):

Annotation Number : CG9911
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030734
Gbrowse : chrX:16187872-16190918 (-) // 100.0 //
Probeset : 1624499_s_at
Accessions : protein= NP_573111; /// NP_727947; /// NP_727948; /// NP_727949;, nucleotide= NM_132883; /// NM_167494; /// NM_167495; /// NM_167496;
Interpro : 0003756 // protein disulfide isomerase activity // inferred from sequence or structural similarity /// 0003756 // protei
FlyMine data for FBgn0030734.
TRiP has 1 RNAi stocks for FBgn0030734 available for purchase.
VDRC has 3 RNAi stocks for FBgn0030734 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain466 74 of 4 0.90None
Head576 274 of 4 1.20None
Eye754 84 of 4 1.50Up
Thoracicoabdominal ganglion541 194 of 4 1.10None
Salivary gland3148 1554 of 4 6.28Up
Crop489 64 of 4 1.00None
Midgut788 134 of 4 1.60Up
Tubule515 314 of 4 1.00None
Hindgut635 74 of 4 1.30Up
Heart556 144 of 4 1.11None
Fat body495 454 of 4 0.99None
Ovary595 64 of 4 1.20Up
Testis228 124 of 4 0.50Down
Male accessory glands3285 1354 of 4 6.60Up
Virgin spermatheca1126 364 of 4 2.25Up
Mated spermatheca1255 944 of 4 2.50Up
Adult carcass422 274 of 4 0.80None
Larval CNS519 254 of 4 1.04None
Larval Salivary gland4709 1914 of 4 9.39Up
Larval midgut832 404 of 4 1.66Up
Larval tubule544 184 of 4 1.10None
Larval hindgut689 164 of 4 1.38Up
Larval fat body592 754 of 4 1.20None
Larval trachea753 914 of 4 1.50Up
Larval carcass674 524 of 4 1.35Up
S2 cells (growing)1045 154 of 4 2.09Up
Whole fly501 224 of 4

Looking for CG9911-RB. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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