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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9914-RA through 18771 annotations produced 1 hits



Enoyl-CoA hydratase mitochondrial /// (CG9914 /// DsecCG9914):

Annotation Number : CG9914
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030737
Gbrowse : chrX:16200998-16202416 (-) // 100.0 //
Probeset : 1627854_at
Accessions : protein= NP_573114;, nucleotide= NM_132886;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0003857 // 3-hydroxyacyl-CoA dehydrogenase acti
FlyMine data for FBgn0030737.
Homophila reports that CG9914 is a close match (6e-17) to human gene HADHSC;SCHAD;HHF4 (NP_005318), a gene associated with 3-hydroxyacyl-CoA dehydrogenase deficiency, 231530 (3);Hyperinsulinemic hypoglycemia, familial, 4, 609975 (3).
VDRC has 3 RNAi stocks for FBgn0030737 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain78 ± 54 of 4 0.10Down
Head1403 ± 1434 of 4 1.60Up
Eye278 ± 504 of 4 0.32Down
Thoracicoabdominal ganglion106 ± 94 of 4 0.10Down
Salivary gland315 ± 314 of 4 0.36Down
Crop106 ± 84 of 4 0.10Down
Midgut1610 ± 1354 of 4 1.80Up
Tubule6203 ± 3634 of 4 7.10Up
Hindgut380 ± 274 of 4 0.40Down
Heart1314 ± 1164 of 4 1.51Up
Fat body2545 ± 2234 of 4 2.92Up
Ovary144 ± 34 of 4 0.20Down
Testis8 ± 13 of 4 0.00Down
Male accessory glands19 ± 24 of 4 0.00Down
Virgin spermatheca2178 ± 1134 of 4 2.50Up
Mated spermatheca1222 ± 1734 of 4 1.40None
Adult carcass2396 ± 764 of 4 2.80Up
Larval CNS232 ± 514 of 4 0.27Down
Larval Salivary gland30 ± 24 of 4 0.03Down
Larval midgut860 ± 1244 of 4 0.99None
Larval tubule5636 ± 2364 of 4 6.50Up
Larval hindgut446 ± 274 of 4 0.51Down
Larval fat body608 ± 904 of 4 0.70None
Larval trachea558 ± 504 of 4 0.64Down
Larval carcass1605 ± 1494 of 4 1.84Up
S2 cells (growing)8 ± 14 of 4 0.01Down
Whole fly871 ± 314 of 4

Looking for CG9914-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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