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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG9920-RA through 18771 annotations produced 1 hits


(CG9920):

Annotation Number : CG9920
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038200
Gbrowse : chr3R:9923011-9923802 (-) // 99.45 //
Probeset : 1634719_at
Accessions : protein= NP_650333;, nucleotide= NM_142076;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005759 // mitochondrial matrix // inferred from sequenc
Interpro : 0005524 // ATP binding // inferred from electronic annotation /// 0051082 // unfolded protein binding // inferred from s
FlyMine data for FBgn0038200.
TRiP has 1 RNAi stocks for FBgn0038200 available for purchase.
VDRC has 2 RNAi stocks for FBgn0038200 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head8 ± 22 of 4 0.00Down
Eye4 ± 01 of 4 0.00Down
Thoracicoabdominal ganglion3 ± 11 of 4 0.00Down
Salivary gland9 ± 51 of 4 0.01Down
Crop8 ± 22 of 4 0.00Down
Midgut5 ± 10 of 4 0.00Down
Tubule5 ± 10 of 4 0.00Down
Hindgut2 ± 00 of 4 0.00Down
Heart8 ± 12 of 4 0.01Down
Fat body5 ± 10 of 4 0.00Down
Ovary1 ± 01 of 4 0.00Down
Testis3322 ± 1844 of 4 2.70Up
Male accessory glands11 ± 12 of 4 0.00Down
Virgin spermatheca1 ± 00 of 4 0.00Down
Mated spermatheca6 ± 01 of 4 0.01Down
Adult carcass44 ± 84 of 4 0.00Down
Larval CNS3 ± 10 of 4 0.00Down
Larval Salivary gland2 ± 00 of 4 0.00Down
Larval midgut8 ± 11 of 4 0.01Down
Larval tubule4 ± 20 of 4 0.00Down
Larval hindgut5 ± 11 of 4 0.00Down
Larval fat body1166 ± 5424 of 4 0.90None
Larval trachea52 ± 764 of 4 0.04Down
Larval carcass10 ± 22 of 4 0.01Down
S2 cells (growing)1 ± 00 of 4 0.00Down
Whole fly1251 ± 844 of 4

Looking for CG9920-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime