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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9922-RA through 18771 annotations produced 1 hits



(CG9922):

Annotation Number : CG9922
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038196
Gbrowse : chr3R:9860737-9861887 (-) // 100.0 //
Probeset : 1625394_at
Accessions : protein= NP_650329;, nucleotide= NM_142072;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0038196.
VDRC has 3 RNAi stocks for FBgn0038196 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain144 ± 34 of 4 0.30Down
Head217 ± 114 of 4 0.40Down
Eye130 ± 54 of 4 0.25Down
Thoracicoabdominal ganglion189 ± 144 of 4 0.40Down
Salivary gland200 ± 44 of 4 0.38Down
Crop344 ± 224 of 4 0.60Down
Midgut314 ± 54 of 4 0.60Down
Tubule189 ± 174 of 4 0.40Down
Hindgut187 ± 54 of 4 0.40Down
Heart308 ± 114 of 4 0.58Down
Fat body429 ± 274 of 4 0.81Down
Ovary962 ± 244 of 4 1.80Up
Testis948 ± 214 of 4 1.80Up
Male accessory glands562 ± 224 of 4 1.10None
Virgin spermatheca579 ± 304 of 4 1.09None
Mated spermatheca678 ± 284 of 4 1.28Up
Adult carcass273 ± 204 of 4 0.50Down
Larval CNS675 ± 254 of 4 1.27Up
Larval Salivary gland822 ± 264 of 4 1.55Up
Larval midgut256 ± 174 of 4 0.48Down
Larval tubule351 ± 94 of 4 0.70Down
Larval hindgut392 ± 244 of 4 0.74Down
Larval fat body441 ± 244 of 4 0.80Down
Larval trachea571 ± 944 of 4 1.08None
Larval carcass448 ± 324 of 4 0.85None
S2 cells (growing)566 ± 44 of 4 1.07None
Whole fly530 ± 134 of 4

Looking for CG9922-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime