FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG9927-RA through 18771 annotations produced 1 hits

Arginine methyltransferase 6 (Art6):

Annotation Number : CG9927
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038189
Gbrowse : chr3R:9770420-9771504 (-) // 100.0 //
Probeset : 1624266_at
Accessions : protein= NP_650322;, nucleotide= NM_142065;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0008168 // methyltransferase activity // inferred f
FlyMine data for FBgn0038189.
TRiP has 1 RNAi stocks for FBgn0038189 available for purchase.
VDRC has 3 RNAi stocks for FBgn0038189 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	4 ± 1	1 of 4	0.30	None
Head	4 ± 0	0 of 4	0.30	None
Eye	3 ± 1	0 of 4	0.27	None
Thoracicoabdominal ganglion	6 ± 1	0 of 4	0.50	None
Salivary gland	27 ± 5	4 of 4	2.14	None
Crop	11 ± 0	1 of 4	0.90	None
Midgut	8 ± 1	0 of 4	0.70	None
Tubule	7 ± 0	0 of 4	0.60	Down
Hindgut	8 ± 1	1 of 4	0.70	None
Heart	3 ± 1	0 of 4	0.31	None
Fat body	13 ± 2	2 of 4	1.04	None
Ovary	6 ± 0	1 of 4	0.50	None
Testis	79 ± 5	4 of 4	6.20	Up
Male accessory glands	8 ± 2	0 of 4	0.60	None
Virgin spermatheca	4 ± 1	0 of 4	0.38	None
Mated spermatheca	6 ± 1	2 of 4	0.51	None
Adult carcass	15 ± 3	1 of 4	1.20	None
Larval CNS	6 ± 2	1 of 4	0.48	None
Larval Salivary gland	7 ± 2	0 of 4	0.58	None
Larval midgut	13 ± 2	3 of 4	1.08	None
Larval tubule	10 ± 1	2 of 4	0.80	None
Larval hindgut	10 ± 1	3 of 4	0.78	None
Larval fat body	22 ± 5	2 of 4	1.70	None
Larval trachea	8 ± 2	1 of 4	0.64	None
Larval carcass	10 ± 1	3 of 4	0.80	None
S2 cells (growing)	6 ± 1	0 of 4	0.50	None
Whole fly	12 ± 3	1 of 4

Looking for CG9927-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720